Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0720.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)            93   1e-19
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ...    92   3e-19
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ...    92   3e-19
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)            91   7e-19
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi...    90   1e-18
At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containi...    32   0.25 
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains...    29   2.4  
At5g40530.2 68418.m04918 expressed protein contains Pfam profile...    29   3.1  
At5g40530.1 68418.m04919 expressed protein contains Pfam profile...    29   3.1  
At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containi...    27   7.2  
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    27   7.2  

>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
          Length = 140

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 43/79 (54%), Positives = 61/79 (77%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T 
Sbjct: 44  KRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL 103

Query: 73  DMLKMLDFNNINGLQLTQP 17
           +ML  L  ++ +G+   +P
Sbjct: 104 EMLASLGMSDTSGISAVEP 122



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                +R+TLDF TNK+I EE+AIIP+  L  K+
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 43/79 (54%), Positives = 60/79 (75%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T 
Sbjct: 44  KRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL 103

Query: 73  DMLKMLDFNNINGLQLTQP 17
           +ML  L  ++  G+   +P
Sbjct: 104 EMLASLGMSDTPGISAVEP 122



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                +R+TLDF TNK+I EE+AIIP+  L  K+
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
           ribosomal protein S17, Lycopersicon esculentum,
           EMBL:AF161704
          Length = 141

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 43/79 (54%), Positives = 60/79 (75%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T 
Sbjct: 44  KRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL 103

Query: 73  DMLKMLDFNNINGLQLTQP 17
           +ML  L  ++  G+   +P
Sbjct: 104 EMLASLGMSDTPGISAVEP 122



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                +R+TLDF TNK+I EE+AIIP+  L  K+
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
          Length = 141

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 43/79 (54%), Positives = 59/79 (74%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D I+VD +T 
Sbjct: 44  KRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL 103

Query: 73  DMLKMLDFNNINGLQLTQP 17
           +ML  L  ++  G+    P
Sbjct: 104 EMLASLGMSDTLGISAVDP 122



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                +R+TLDF TNK+I EE+AIIP+  L  K+
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
           to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
           esculentum]
          Length = 140

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 42/74 (56%), Positives = 59/74 (79%)
 Frame = -1

Query: 253 KPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTK 74
           K LRNKIAGF+THLM+R++   VRGIS+KLQEEERERR ++VP+ SA++ D ++VD +T 
Sbjct: 44  KRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETL 103

Query: 73  DMLKMLDFNNINGL 32
           +ML  L  ++I G+
Sbjct: 104 EMLASLGMSDIAGI 117



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = -2

Query: 381 MGRXRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTSLLGIKL 232
           MGR R                +R+TLDF TNK+I EE+AIIP+  L  K+
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 50


>At1g25360.1 68414.m03146 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 790

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -1

Query: 220 THLMRRLRHSQVRGISIKLQEEERE-RRDNYVPEVSALEHDIIEVDPDTKDML 65
           T L+    H +   + I LQ+  +E RR  YVP+ S + HD +E D   +DML
Sbjct: 668 TFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHD-VESDGHKEDML 719


>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 473

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 262 HSYKPLRNKIAGFATHLMRRLRHSQVR-GISIKLQEEERERRDNY 131
           H++ P+   +   AT   + LR SQVR    + L+ +E + RD Y
Sbjct: 74  HAFDPIETYLGAKATDKAKHLRASQVRESKGLVLKRDETKVRDEY 118


>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 301

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 18  GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 125
           GC   R    +K+ +F+  LVS + S+++C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
           PF05148: Protein of unknown function (DUF691)
          Length = 287

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 18  GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 125
           GC   R    +K+ +F+  LVS + S+++C  ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177


>At4g14050.1 68417.m02170 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 612

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 172 IKLQEEERERRDNYVPEVSALEHDIIEVDPD 80
           +K  EEE   R+ YVP+ S + HD+ E + +
Sbjct: 508 LKKLEEEMRIRNGYVPDTSWILHDMDEQEKE 538


>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 507 KRRPVNCNTTHYRANWVPGPPSRSTVSIS 421
           K R  NC  TH ++ W+P   +RS+ S S
Sbjct: 62  KSRGYNC-VTHVKSTWIPSSATRSSSSPS 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,817
Number of Sequences: 28952
Number of extensions: 202353
Number of successful extensions: 589
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)