Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0719.Seq
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 136 6e-33
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 135 2e-32
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 113 5e-26
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 2e-23
SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049) 66 2e-11
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 9e-11
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 50 1e-06
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8) 29 1.8
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0) 27 7.2
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 136 bits (330), Expect = 6e-33
Identities = 74/149 (49%), Positives = 85/149 (57%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEA 180
I RKF+D V DM HWPF V+ +G +PKI+V +KGE K+FFPEE+SSMVLTKM ETAEA
Sbjct: 74 IGRKFDDPVVARDMTHWPFHVIREGERPKIQVEFKGEKKSFFPEEISSMVLTKMKETAEA 133
Query: 181 YXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXENE 360
Y G V +A +TVPAYF+DSQRQATK
Sbjct: 134 YLGAKVTDAVVTVPAYFHDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVER 193
Query: 361 MYLSLTXAGXTXDVYXLTIEDGIX*VKST 447
L G T DV LTIEDGI VKST
Sbjct: 194 NVLIYDLGGGTFDVSVLTIEDGIFEVKST 222
Score = 73.3 bits (172), Expect = 8e-14
Identities = 36/42 (85%), Positives = 38/42 (90%)
Frame = +3
Query: 255 KDAGTISGLNVLRIINEPTAXAIAYGLDKKGTGERNVLIFDL 380
KDAGTI+GLNVLRIINEPTA AIAYGLDKK ERNVLI+DL
Sbjct: 159 KDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGVERNVLIYDL 200
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 135 bits (326), Expect = 2e-32
Identities = 78/151 (51%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEA 180
I R+++DATVQ+DMK WPF ++SD KPKI+V YKGE KTF EE+SSMVL KM ETAEA
Sbjct: 74 IGRRYDDATVQSDMKLWPFKIISDNNKPKIQVEYKGERKTFAAEEISSMVLGKMKETAEA 133
Query: 181 YXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXENE 360
Y G+ V +A ITVPAYFNDSQRQATK ++A +N E
Sbjct: 134 YLGQKVTSAVITVPAYFNDSQRQATK-DAGTIAGLNVLRVINEPTAAALAYGLDKSLSGE 192
Query: 361 M-YLSLTXAGXTXDVYXLTIEDG-IX*VKST 447
L G T DV LTI+DG + VKST
Sbjct: 193 KNVLIFDLGGGTFDVSILTIDDGSLFEVKST 223
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 113 bits (273), Expect = 5e-26
Identities = 65/149 (43%), Positives = 85/149 (57%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEA 180
I R ++D +VQ D+K +PF VV KP ++V K E KTF EE+S+MVLTKM ETAEA
Sbjct: 772 IGRSWDDTSVQNDLKFFPFKVVDKNKKPHVQVKVKDEIKTFAAEEISAMVLTKMKETAEA 831
Query: 181 YXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXENE 360
Y GK V +A +TVPAYFND+QRQATK ++A +N +
Sbjct: 832 YLGKKVTHAVVTVPAYFNDAQRQATK-DAGAIAGLTVMRIINEPTAAAIAYGMDKKEGEK 890
Query: 361 MYLSLTXAGXTXDVYXLTIEDGIX*VKST 447
L G T DV LTI++G+ V +T
Sbjct: 891 NILVFDLGGGTFDVSLLTIDNGVFEVVAT 919
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 105 bits (252), Expect = 2e-23
Identities = 60/111 (54%), Positives = 69/111 (62%), Gaps = 25/111 (22%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEV-------------- 138
I R+F+D V+ DMKHW F VV++ G+PK+KV YKGE KTFF EEV
Sbjct: 74 IGRRFDDPGVKDDMKHWSFEVVNEAGRPKVKVEYKGETKTFFAEEVVNEAGRPKVKVEYK 133
Query: 139 -----------SSMVLTKMXETAEAYXGKTVQNAXITVPAYFNDSQRQATK 258
SSMVL KM ETAEAY G V +A +TVPAYFNDSQRQATK
Sbjct: 134 GETKTFFAEEISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATK 184
Score = 74.1 bits (174), Expect = 5e-14
Identities = 37/42 (88%), Positives = 37/42 (88%)
Frame = +3
Query: 255 KDAGTISGLNVLRIINEPTAXAIAYGLDKKGTGERNVLIFDL 380
KDAG ISGLNVLRIINEPTA AIAYGLDKK ERNVLIFDL
Sbjct: 252 KDAGVISGLNVLRIINEPTAAAIAYGLDKKVGQERNVLIFDL 293
Score = 73.7 bits (173), Expect = 6e-14
Identities = 46/105 (43%), Positives = 52/105 (49%)
Frame = +1
Query: 133 EVSSMVLTKMXETAEAYXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXX 312
++SSMVL KM ETAEAY G V +A +TVPAYFNDSQRQATK
Sbjct: 211 QISSMVLNKMKETAEAYLGCKVTDAVVTVPAYFNDSQRQATKDAGVISGLNVLRIINEPT 270
Query: 313 XXXXXXXXXXXXXENEMYLSLTXAGXTXDVYXLTIEDGIX*VKST 447
+ L G T DV L+IEDGI VKST
Sbjct: 271 AAAIAYGLDKKVGQERNVLIFDLGGGTFDVSVLSIEDGIFEVKST 315
>SB_57217| Best HMM Match : Helicase_C (HMM E-Value=0.049)
Length = 179
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/57 (52%), Positives = 43/57 (75%)
Frame = +1
Query: 88 IKVAYKGEDKTFFPEEVSSMVLTKMXETAEAYXGKTVQNAXITVPAYFNDSQRQATK 258
I V GE ++F PE++S++VL ++ AEA+ G+ V+ A ITVPA+FND+QRQATK
Sbjct: 2 IAVEVCGEKRSFAPEQISAVVLEQLKADAEAFLGQAVKRAVITVPAHFNDAQRQATK 58
Score = 41.9 bits (94), Expect = 2e-04
Identities = 22/28 (78%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
Frame = +3
Query: 285 VLRIINEPTAXAIAYGLDKK--GTGERN 362
VLRIINEPTA AIAYGLDK G ERN
Sbjct: 92 VLRIINEPTAAAIAYGLDKARGGKAERN 119
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 63.3 bits (147), Expect = 9e-11
Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I RKF D VQ ++ H P+ VV I+V Y G+ + F PE+V +M+ T++ TAE
Sbjct: 130 IGRKFSDPAVQKEIPHLPYKVVELPNDSIGIQVQYLGKQEVFSPEQVMAMLFTRLKTTAE 189
Query: 178 AYXGKTVQNAXITVPAYFNDSQRQ 249
V + I+VP+Y+ D QR+
Sbjct: 190 IALKTKVTDCVISVPSYYTDRQRR 213
Score = 36.3 bits (80), Expect = 0.012
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = +3
Query: 258 DAGTISGLNVLRIINEPTAXAIAYGLDKKG---TGERNVLIFDL 380
DA +GLN LR++N+ TA ++AYG+ K+ RNV+ D+
Sbjct: 217 DASATAGLNCLRLMNDTTAVSLAYGIYKQDLPTDKPRNVVFVDI 260
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = +3
Query: 261 AGTISGLNVLRIINEPTAXAIAYGLDKKGTGERNVLIFDL 380
A +++G+ VLR+INEPTA A+AYGL KK G NV++ DL
Sbjct: 191 AASLAGITVLRVINEPTAAALAYGLHKK-EGVANVMVVDL 229
Score = 42.3 bits (95), Expect = 2e-04
Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +1
Query: 43 KHWPFXVVSDG-GKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEAYXGKTVQNAXITV 219
K + F V +D G V KG PEE+ V+ K+ AE TV A ++V
Sbjct: 117 KLYQFRVTTDKRGNAGFLVGKKGNFTVITPEEIGGYVIKKLRTMAERNLTTTVTKAVMSV 176
Query: 220 PAYFNDSQRQATKMQVPSLA 279
PA F+ QR AT ++ SLA
Sbjct: 177 PAEFDIKQRNAT-VKAASLA 195
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 41.9 bits (94), Expect = 2e-04
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +1
Query: 82 PKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEAYXGKTVQNAXITVPAYFNDSQRQA 252
P +K Y+ D TF PEE+ M+L E + +++ +TVP +FN ++R+A
Sbjct: 68 PHVK-NYQQSDVTFTPEELMGMILNHSRFIGEQFADHPIKDVVLTVPPFFNQAERRA 123
Score = 31.5 bits (68), Expect = 0.33
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Frame = +3
Query: 261 AGTISGLNVLRIINEPTAXAIAYGLDKK----GTGERNVLIFDL 380
A + GLNVL+I+N TA A+ YGL ++ T E++ + +D+
Sbjct: 127 AAELVGLNVLQIMNSNTAVALNYGLFQQKSFNDTLEKHFMFYDM 170
>SB_47707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 627
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 177 SLXWQNCAECXYHGSRVLQ--*LSKTSHKDAGTISGLNVLRIINEPTAXAIAYGLDKKGT 350
SL W C + YHG +V++ + H AG S NV+R + P A G K T
Sbjct: 523 SLVWARCPKHKYHGYKVIRCAVAAAVCHFHAGASSRENVMRRLCVP-AGHTQEGHPSKRT 581
Query: 351 G 353
G
Sbjct: 582 G 582
>SB_37798| Best HMM Match : Sec15 (HMM E-Value=1.8)
Length = 1007
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 162 EXNCRSLXW--QNCAECXYHGSRVLQ*LSKTSHKDA 263
+ N L W Q+ EC G +L+ L+K SHKDA
Sbjct: 367 QMNEHGLNWFNQDLRECEGEGLTILEKLAKLSHKDA 402
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 224 RTSMTLKDKPQRCRYHLWLERSSNH 298
R+ L D+P R Y+L+ ER+SNH
Sbjct: 151 RSRTILFDRPLRIEYNLYPERTSNH 175
>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 890
Score = 27.1 bits (57), Expect = 7.2
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Frame = -1
Query: 269 GTCIFVACL*ESLKYAGTVIXAFCT---VLPX*ASAVSFILVSTMELTSSGKKVLSSPLY 99
GTC A + ES+ Y I T LP A+ + + + ++ +++ ++ LSSPLY
Sbjct: 191 GTC--EASMNESVSYPIAAIVGALTSRAALPL-ANFLQAVRIPLVDASATSEE-LSSPLY 246
Query: 98 ATLILGLPPSLTTXK 54
T +PP + K
Sbjct: 247 KTFFRTIPPDVNQAK 261
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,687,233
Number of Sequences: 59808
Number of extensions: 192119
Number of successful extensions: 444
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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