Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0719.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical pr... 143 5e-35
M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein ( C.ele... 137 4e-33
Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical pr... 122 1e-28
Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical pr... 122 1e-28
U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock prot... 120 4e-28
M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C. el... 120 4e-28
Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical pr... 115 2e-26
AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock pr... 114 2e-26
U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock prot... 87 7e-18
X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein. 83 7e-17
Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical p... 66 1e-11
Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical pr... 66 1e-11
L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical pr... 53 1e-07
Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical pr... 49 2e-06
Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical pr... 40 8e-04
Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical pr... 40 8e-04
U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical pr... 34 0.055
>Z80223-1|CAB02319.1| 640|Caenorhabditis elegans Hypothetical
protein F26D10.3 protein.
Length = 640
Score = 143 bits (347), Expect = 5e-35
Identities = 80/151 (52%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I RKF+D VQ+DMKHWPF V+S +G KPK++V YKGE+K F PEE+SSMVL KM ETAE
Sbjct: 74 IGRKFDDPAVQSDMKHWPFKVISAEGAKPKVQVEYKGENKIFTPEEISSMVLLKMKETAE 133
Query: 178 AYXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXEN 357
A+ G TV++A +TVPAYFNDSQRQATK ++A +N
Sbjct: 134 AFLGTTVKDAVVTVPAYFNDSQRQATK-DAGAIAGLNVLRIINEPTAAAIAYGLDKKGHG 192
Query: 358 EM-YLSLTXAGXTXDVYXLTIEDGIX*VKST 447
E L G T DV LTIEDGI VKST
Sbjct: 193 ERNVLIFDLGGGTFDVSILTIEDGIFEVKST 223
>M18540-1|AAA28078.1| 640|Caenorhabditis elegans protein (
C.elegans heat shockprotein 70A gene, complete cds. ).
Length = 640
Score = 137 bits (331), Expect = 4e-33
Identities = 77/151 (50%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I RKF+D VQ+DMKHWPF V+S +G KPK++V YKGE+K F PEE+SSMVL KM +TAE
Sbjct: 74 IGRKFDDPAVQSDMKHWPFKVISAEGAKPKVQVEYKGENKIFTPEEISSMVLLKMKKTAE 133
Query: 178 AYXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXEN 357
A+ TV++A +TVP YFNDSQRQATK ++A +N
Sbjct: 134 AFLEPTVKDAVVTVPTYFNDSQRQATK-DAGAIAGLNVLRIINEPTAAAIAYGLDKKGHG 192
Query: 358 EM-YLSLTXAGXTXDVYXLTIEDGIX*VKST 447
E L G T DV LTIEDGI VKST
Sbjct: 193 ERNVLIFDLGGGTFDVSILTIEDGIFEVKST 223
>Z83108-5|CAB05508.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.5 protein.
Length = 645
Score = 122 bits (294), Expect = 1e-28
Identities = 72/151 (47%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEA 180
I R+F+++TVQ+D KHWPF V GKP I+V KGE + F PEE+S+MVL KM ETAE
Sbjct: 74 IGRRFDESTVQSDCKHWPFGVKGKQGKPVIEVEVKGEKRQFNPEEISAMVLQKMKETAET 133
Query: 181 YXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXENE 360
Y G TV++A ITVPAYFNDSQRQATK ++A +N ++E
Sbjct: 134 YLGHTVKDAVITVPAYFNDSQRQATK-DAATIAGLNAIRIINEPTAAALAYGLDKGIQDE 192
Query: 361 M-YLSLTXAGXTXDVYXLTIEDG-IX*VKST 447
L G T DV L+I +G I VKST
Sbjct: 193 KNVLIFDLGGGTFDVSILSIAEGSIFEVKST 223
>Z83108-4|CAB05507.1| 645|Caenorhabditis elegans Hypothetical
protein F44E5.4 protein.
Length = 645
Score = 122 bits (294), Expect = 1e-28
Identities = 72/151 (47%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEA 180
I R+F+++TVQ+D KHWPF V GKP I+V KGE + F PEE+S+MVL KM ETAE
Sbjct: 74 IGRRFDESTVQSDCKHWPFGVKGKQGKPVIEVEVKGEKRQFNPEEISAMVLQKMKETAET 133
Query: 181 YXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXENE 360
Y G TV++A ITVPAYFNDSQRQATK ++A +N ++E
Sbjct: 134 YLGHTVKDAVITVPAYFNDSQRQATK-DAATIAGLNAIRIINEPTAAALAYGLDKGIQDE 192
Query: 361 M-YLSLTXAGXTXDVYXLTIEDG-IX*VKST 447
L G T DV L+I +G I VKST
Sbjct: 193 KNVLIFDLGGGTFDVSILSIAEGSIFEVKST 223
>U56965-1|AAB52671.1| 661|Caenorhabditis elegans Heat shock protein
protein 3 protein.
Length = 661
Score = 120 bits (290), Expect = 4e-28
Identities = 65/149 (43%), Positives = 84/149 (56%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEA 180
I R + D TVQAD+KHWPF V+ KP ++V ++K F PEEVS+MVL KM E AE+
Sbjct: 105 IGRDYNDKTVQADIKHWPFKVIDKSNKPSVEVKVGSDNKQFTPEEVSAMVLVKMKEIAES 164
Query: 181 YXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXENE 360
Y GK V+NA +TVPAYFND+QRQATK ++A +N
Sbjct: 165 YLGKEVKNAVVTVPAYFNDAQRQATK-DAGTIAGLNVVRIINEPTAAAIAYGLDKKDGER 223
Query: 361 MYLSLTXAGXTXDVYXLTIEDGIX*VKST 447
L G T DV LTI++G+ V +T
Sbjct: 224 NILVFDLGGGTFDVSMLTIDNGVFEVLAT 252
>M26604-1|AAA28074.1| 661|Caenorhabditis elegans protein ( C.
elegans BiP (hsp3)gene, complete cds. ).
Length = 661
Score = 120 bits (290), Expect = 4e-28
Identities = 65/149 (43%), Positives = 84/149 (56%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEA 180
I R + D TVQAD+KHWPF V+ KP ++V ++K F PEEVS+MVL KM E AE+
Sbjct: 105 IGRDYNDKTVQADIKHWPFKVIDKSNKPSVEVKVGSDNKQFTPEEVSAMVLVKMKEIAES 164
Query: 181 YXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXENE 360
Y GK V+NA +TVPAYFND+QRQATK ++A +N
Sbjct: 165 YLGKEVKNAVVTVPAYFNDAQRQATK-DAGTIAGLNVVRIINEPTAAAIAYGLDKKDGER 223
Query: 361 MYLSLTXAGXTXDVYXLTIEDGIX*VKST 447
L G T DV LTI++G+ V +T
Sbjct: 224 NILVFDLGGGTFDVSMLTIDNGVFEVLAT 252
>Z81467-1|CAB03871.1| 643|Caenorhabditis elegans Hypothetical
protein C12C8.1 protein.
Length = 643
Score = 115 bits (276), Expect = 2e-26
Identities = 66/150 (44%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEA 180
I R+F++ TVQ+D+KHWPF V GKP ++V KGE + F EE+S+MVL KM ETAEA
Sbjct: 74 IGRRFDEETVQSDIKHWPFTVKGKQGKPVVEVEVKGEKREFNAEEISAMVLQKMKETAEA 133
Query: 181 YXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXENE 360
G +V++A ITVPAYFNDSQRQATK + +
Sbjct: 134 VLGHSVRDAVITVPAYFNDSQRQATKDAATIAGLNAIRIINEPTAAALAYGLDKGITDEK 193
Query: 361 MYLSLTXAGXTXDVYXLTIEDG-IX*VKST 447
L G T DV L+I +G I VKST
Sbjct: 194 NILIFDLGGGTFDVSILSIAEGSIFEVKST 223
>AF000264-1|AAC71123.1| 657|Caenorhabditis elegans Heat shock
protein protein 4 protein.
Length = 657
Score = 114 bits (275), Expect = 2e-26
Identities = 63/149 (42%), Positives = 81/149 (54%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEA 180
I R + + TVQ D+KHWPF +V KP ++V E K F PEEVS+MVLTKM + AE+
Sbjct: 102 IGRFYNEKTVQQDIKHWPFKIVDKSNKPNVEVKVGSETKQFTPEEVSAMVLTKMKQIAES 161
Query: 181 YXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXENE 360
Y G V+NA +TVPAYFND+Q+QATK S+A +N
Sbjct: 162 YLGHEVKNAVVTVPAYFNDAQKQATK-DAGSIAGLNVVRIINEPTAAAIAYGLDKKDGER 220
Query: 361 MYLSLTXAGXTXDVYXLTIEDGIX*VKST 447
L G T DV LTI+ G+ V +T
Sbjct: 221 NILVFDLGGGTFDVSLLTIDSGVFEVLAT 249
>U88315-3|AAB42371.1| 657|Caenorhabditis elegans Heat shock protein
protein 6 protein.
Length = 657
Score = 86.6 bits (205), Expect = 7e-18
Identities = 55/150 (36%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVV-SDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I R++ED VQ D+K P+ +V + G ++ + K + P +V + VL KM ETAE
Sbjct: 102 IGRRYEDPEVQKDLKVVPYKIVKASNGDAWVEA----QGKVYSPSQVGAFVLMKMKETAE 157
Query: 178 AYXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXEN 357
+Y G TV NA +TVPAYFNDSQRQATK ++ +N +
Sbjct: 158 SYLGTTVNNAVVTVPAYFNDSQRQATK-DAGQISGLNVLRVINEPTAAALAYGLDKDAGD 216
Query: 358 EMYLSLTXAGXTXDVYXLTIEDGIX*VKST 447
++ G T DV L I+ G+ VKST
Sbjct: 217 KIIAVYDLGGGTFDVSILEIQKGVFEVKST 246
Score = 60.9 bits (141), Expect = 4e-10
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +3
Query: 255 KDAGTISGLNVLRIINEPTAXAIAYGLDKKGTGERNVLIFDL 380
KDAG ISGLNVLR+INEPTA A+AYGLD K G++ + ++DL
Sbjct: 184 KDAGQISGLNVLRVINEPTAAALAYGLD-KDAGDKIIAVYDL 224
>X07678-1|CAA30525.1| 487|Caenorhabditis elegans hsp6F protein.
Length = 487
Score = 83.4 bits (197), Expect = 7e-17
Identities = 54/150 (36%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVV-SDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I R++ED VQ D+K P+ +V + G ++ + K + P +V + VL KM ETAE
Sbjct: 102 IGRRYEDPEVQKDLKVVPYKIVKASNGDAWVEA----QGKEYPPSQVGAFVLMKMKETAE 157
Query: 178 AYXGKTVQNAXITVPAYFNDSQRQATKMQVPSLA*TFFESSMNXXXXXXXXXXXXXXXEN 357
+Y G TV N +TVPAYFNDSQRQATK ++ +N +
Sbjct: 158 SYLGTTVNNPVVTVPAYFNDSQRQATK-DAGQISGLNVLRVINEPTAAALAYGLDKDAGD 216
Query: 358 EMYLSLTXAGXTXDVYXLTIEDGIX*VKST 447
++ G T DV L I+ G+ VKST
Sbjct: 217 KIIAVYDLGGGTFDVSILEIQKGVFEVKST 246
Score = 60.9 bits (141), Expect = 4e-10
Identities = 28/42 (66%), Positives = 35/42 (83%)
Frame = +3
Query: 255 KDAGTISGLNVLRIINEPTAXAIAYGLDKKGTGERNVLIFDL 380
KDAG ISGLNVLR+INEPTA A+AYGLD K G++ + ++DL
Sbjct: 184 KDAGQISGLNVLRVINEPTAAALAYGLD-KDAGDKIIAVYDL 224
>Z81113-10|CAB54300.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 65.7 bits (153), Expect = 1e-11
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSD-GGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I R+++D +Q DM WPF V D G P +++ + F VSS++L + AE
Sbjct: 70 IGRRYDDVLLQRDMPLWPFKVEKDDNGIPYLEIHKNEKPLKFSAVTVSSLILRCLKYNAE 129
Query: 178 AYXGKTVQNAXITVPAYFNDSQRQATK 258
G V++A ITVPAYFN +QR+AT+
Sbjct: 130 RKLGLEVKSAVITVPAYFNATQRRATE 156
Score = 52.0 bits (119), Expect = 2e-07
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +3
Query: 255 KDAGTISGLNVLRIINEPTAXAIAYGLDKKGTGERNVLIFDL 380
++A I+GL VLRI+NEPTA AIAY L + RN+LI+DL
Sbjct: 156 EEAAEIAGLKVLRILNEPTAAAIAYSLKGQRLSRRNILIYDL 197
>Z81059-7|CAB54217.1| 607|Caenorhabditis elegans Hypothetical
protein F11F1.1 protein.
Length = 607
Score = 65.7 bits (153), Expect = 1e-11
Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVSD-GGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I R+++D +Q DM WPF V D G P +++ + F VSS++L + AE
Sbjct: 70 IGRRYDDVLLQRDMPLWPFKVEKDDNGIPYLEIHKNEKPLKFSAVTVSSLILRCLKYNAE 129
Query: 178 AYXGKTVQNAXITVPAYFNDSQRQATK 258
G V++A ITVPAYFN +QR+AT+
Sbjct: 130 RKLGLEVKSAVITVPAYFNATQRRATE 156
Score = 52.0 bits (119), Expect = 2e-07
Identities = 24/42 (57%), Positives = 31/42 (73%)
Frame = +3
Query: 255 KDAGTISGLNVLRIINEPTAXAIAYGLDKKGTGERNVLIFDL 380
++A I+GL VLRI+NEPTA AIAY L + RN+LI+DL
Sbjct: 156 EEAAEIAGLKVLRILNEPTAAAIAYSLKGQRLSRRNILIYDL 197
>L09634-1|AAA27967.1| 776|Caenorhabditis elegans Hypothetical
protein C30C11.4 protein.
Length = 776
Score = 52.8 bits (121), Expect = 1e-07
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I RKF D Q + P VV ++V+Y GE TF PE+V + +LTK+ E
Sbjct: 71 IGRKFSDPVAQRFIPFIPCKVVKLPNDDIGVQVSYLGEPHTFTPEQVLAALLTKLRTIVE 130
Query: 178 AYXG--KTVQNAXITVPAYFNDSQRQA 252
+ K V + + VP+YF D QR+A
Sbjct: 131 SQLSDVKKVSDCVLAVPSYFTDVQRRA 157
Score = 37.5 bits (83), Expect = 0.004
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Frame = +3
Query: 273 SGLNVLRIINEPTAXAIAYGLDKKGTGE-----RNVLIFDL 380
+GLN LRI+NE TA A+AYG+ K+ E RNV+ D+
Sbjct: 165 AGLNSLRIVNETTAIALAYGIYKQDLPEEDAKSRNVVFLDI 205
>Z49967-2|CAA90248.2| 450|Caenorhabditis elegans Hypothetical
protein F54C9.2 protein.
Length = 450
Score = 48.8 bits (111), Expect = 2e-06
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +1
Query: 1 IXRKFE--DATVQADMKHWPFXVVSDG-GKPKIKVAYKGEDKTFFPEEVSSMVLTKMXET 171
I R FE + +D K +PF + D GK ++ K +PEE+ S+++ +
Sbjct: 106 IGRNFEKNNKDFLSDQKRYPFKINLDSEGKAFFEIPLDSGTKNVYPEEIGSLIIGYLKSA 165
Query: 172 AEAYXGKTVQNAXITVPAYFNDSQRQAT 255
A + G T+ I+ PA FN+ QR T
Sbjct: 166 AAKHLGVTLGQVVISCPAEFNEKQRNFT 193
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/40 (52%), Positives = 28/40 (70%)
Frame = +3
Query: 261 AGTISGLNVLRIINEPTAXAIAYGLDKKGTGERNVLIFDL 380
A I+ + V R+I+EPTA A+AYGL KK G NV++ DL
Sbjct: 196 AAEIAEMEVRRVISEPTAAALAYGLHKK-QGVENVVVVDL 234
>Z67884-4|CAH60753.1| 905|Caenorhabditis elegans Hypothetical
protein T14G8.3b protein.
Length = 905
Score = 39.9 bits (89), Expect = 8e-04
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I RK D K +PF D + + YK E+K + E + +M+L + E
Sbjct: 81 IARKEGDDAFVTFQKTFPFTAFEFDEVRKTVVFPYK-EEK-YNVETLLAMILWNAKKVTE 138
Query: 178 AYXGKTVQNAXITVPAYFNDSQRQA 252
AY +TV++ ITVP + N ++R+A
Sbjct: 139 AYADQTVKDVVITVPIFLNQAERRA 163
Score = 30.7 bits (66), Expect = 0.51
Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Frame = +3
Query: 261 AGTISGLNVLRIINEPTAXAIAYGL-DKKGTGER--NVLIFDL 380
A I+GLN+L+++N+ +A A+ YG+ +K E+ ++LI+D+
Sbjct: 167 AAEIAGLNLLQLLNDGSAAALNYGVFRRKEITEKPTHMLIYDM 209
>Z67884-3|CAA91809.2| 921|Caenorhabditis elegans Hypothetical
protein T14G8.3a protein.
Length = 921
Score = 39.9 bits (89), Expect = 8e-04
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 IXRKFEDATVQADMKHWPFXVVS-DGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAE 177
I RK D K +PF D + + YK E+K + E + +M+L + E
Sbjct: 97 IARKEGDDAFVTFQKTFPFTAFEFDEVRKTVVFPYK-EEK-YNVETLLAMILWNAKKVTE 154
Query: 178 AYXGKTVQNAXITVPAYFNDSQRQA 252
AY +TV++ ITVP + N ++R+A
Sbjct: 155 AYADQTVKDVVITVPIFLNQAERRA 179
Score = 30.7 bits (66), Expect = 0.51
Identities = 16/43 (37%), Positives = 31/43 (72%), Gaps = 3/43 (6%)
Frame = +3
Query: 261 AGTISGLNVLRIINEPTAXAIAYGL-DKKGTGER--NVLIFDL 380
A I+GLN+L+++N+ +A A+ YG+ +K E+ ++LI+D+
Sbjct: 183 AAEIAGLNLLQLLNDGSAAALNYGVFRRKEITEKPTHMLIYDM 225
>U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical
protein T24H7.2 protein.
Length = 925
Score = 33.9 bits (74), Expect = 0.055
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 55 FXVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTKMXETAEAYX-GKTVQNAXITVPAYF 231
F V D K + +K +++ E +++M+L + E Y +++ ITVP YF
Sbjct: 113 FFEVDDAPKNASSINFKLGGESYTVEALTAMILANAKKFTEEYAQAAEIKDVVITVPVYF 172
Query: 232 NDSQRQATK 258
++R A +
Sbjct: 173 TPAERLAVE 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,525,990
Number of Sequences: 27780
Number of extensions: 138353
Number of successful extensions: 333
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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