Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0718.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    69   3e-13
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.68 
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    27   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.1  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    26   2.7  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    26   2.7  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    26   3.6  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    25   4.8  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   6.3  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   8.4  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 1/142 (0%)
 Frame = +2

Query: 68  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIALMGKNTMMRKAIKDHL 247
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LRG++  +MGKNTM+R+A++  +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67

Query: 248 DNIQPSRNCCHTSRATLASCSPAETXLRS*QT-VGEQSPGSSSSRCHCPIVSRHSRHNTG 424
           +++          R  +             +T +       +      P+       NTG
Sbjct: 68  NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127

Query: 425 LGPEKTXXLQALFILPKXQKGT 490
           + P KT   QAL I  K  +GT
Sbjct: 128 MEPGKTSFFQALGIPTKITRGT 149



 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +1

Query: 256 PALEKLLPHIKGNVGFVFTRGDLVEV 333
           P LE+LLP ++GNVGFVFT  DL EV
Sbjct: 71  PELERLLPVVRGNVGFVFTNADLKEV 96



 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 21/55 (38%), Positives = 28/55 (50%)
 Frame = +3

Query: 333 RDKLLENKVQAPARPGAIAPLSVVIPATTPASVQRKPXXYKLFSSYQKXKRGLIE 497
           R+ ++ N + APARP AIAPL V +PA        K   ++      K  RG IE
Sbjct: 97  RETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIE 151


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 28.3 bits (60), Expect = 0.68
 Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +1

Query: 349 RTKSRLQLVPVPLPHCQSSFPPQHRPRSR----ENLXLTSSFHPTK 474
           RT +R + + VP P  ++SFP  H PRSR    +N  + +S+H  K
Sbjct: 137 RTSTRKRSLTVPTP--RTSFP--HHPRSRRFSLKNAAIATSYHKFK 178


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 306 HEANVALDVWQQFLEGWMLSRWSLMALRIIVFFPMSAILEPR 181
           HE  V  D  +Q    W    W LM + +++F  +  ILEPR
Sbjct: 151 HEEQVWSDKIRQ-ASTW--GTWGLMGINVVLFVVVQLILEPR 189


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 290  ATLASCSPAETXLRS*QTVGEQSPGSSSSRCHCPIVSRHSRHNTG 424
            +++AS +PA T +   ++  E+   S+SSR        H  HN G
Sbjct: 1270 SSMASAAPARTSVSRSKSKAERHETSTSSRKSSKSGEHHHHHNEG 1314


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 298 GFVFTRGDLVEVVTNCWRTKSRLQLVPVPL 387
           GFV T  +++ + T CW   ++ QLV  PL
Sbjct: 548 GFVATFSEML-IQTQCWHLSAQTQLVSNPL 576


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 383 GTGTSWSL-DFVLQQFVTTSTRSPRVNTKPTLPLMCGNSFSRAGCCPG 243
           G G  WS+     +QF+    R P VN++P  P+    S ++ G   G
Sbjct: 197 GKGHFWSIRPGHEEQFLKLKLRKPGVNSRPAPPVQDVTSSTKYGSSTG 244


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 391 HCQSSFPPQHRPRSRENLXLTSSF 462
           H  SSF  QH P +R+ +  TS F
Sbjct: 91  HLDSSFSSQHSPDNRKRMSSTSVF 114


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +2

Query: 104 DEYPKCFIVGADNVGSQQMQQIRISLRGSSIALMGKNTMMRKAIKDHLDNIQPSRN 271
           DE+    +V  ++ G  Q+  + I + G+ IAL+ K  +    IK  +  + P+ N
Sbjct: 698 DEWKNFELVVVESSGEIQVFSLTIEIEGADIALVEKFQLSSPIIKS-ISIVSPTAN 752


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 203 MGKNTMMRKAIKDHLDNIQPSRNCCHTSRATLA 301
           +GK+T++++ +KDH D +    +  HT+R   A
Sbjct: 29  VGKSTLLKRLLKDHGDKL--GFSVSHTTRTPRA 59


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 4/28 (14%)
 Frame = -3

Query: 359 DFVLQQFVTTSTRSPRV----NTKPTLP 288
           DF+++QF+T +T  P+V    +T+P+ P
Sbjct: 91  DFLIKQFLTPTTCQPKVIIGYDTRPSSP 118


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 152 QQMQQIRISLRGSSI-ALMGKNTMMRKAIKDHLDNIQPSRNCCHTSRATLASCSPAETXL 328
           +Q+Q+   S   S I +L GK ++ +  +      IQPS +    +   +A   PA T +
Sbjct: 504 RQIQKAESSEDTSEIESLQGKLSLPQ--VSSTQQEIQPSSSVPEAASNEIAEKEPAVTAI 561

Query: 329 RS*QTVGEQSPGSSSS 376
            S     E++P  SSS
Sbjct: 562 ESITERKEEAPVISSS 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,583
Number of Sequences: 5004
Number of extensions: 43195
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)