Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0718.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 80 8e-16
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 80 8e-16
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 80 8e-16
11_06_0399 - 23129476-23129745,23131040-23131121,23131216-231317... 33 0.17
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 33 0.17
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 32 0.29
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 30 1.2
10_08_0383 - 17424194-17425567 29 1.6
08_01_0247 - 2036206-2036436 29 2.1
06_01_1085 - 8886868-8887556,8887629-8888574 29 2.7
07_03_1537 + 27562097-27562340,27562436-27562494,27562605-275626... 28 4.8
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 6.3
02_05_0092 + 25749070-25750638 27 6.3
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 8.4
08_01_0594 + 5248020-5248137,5248330-5248886 27 8.4
06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,608... 27 8.4
04_01_0359 + 4711289-4713052,4713423-4713950 27 8.4
03_05_0674 + 26619579-26619658,26620020-26620746,26620999-266214... 27 8.4
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 80.2 bits (189), Expect = 8e-16
Identities = 40/69 (57%), Positives = 47/69 (68%)
Frame = +2
Query: 47 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIALMGKNTMMR 226
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SI LMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 227 KAIKDHLDN 253
+ IK H DN
Sbjct: 64 RCIKVHADN 72
Score = 34.7 bits (76), Expect = 0.042
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 333 RDKLLENKVQAPARPGAIAPLSVVIPATTPASVQRKPXXYKLFSSYQKXKRGLIE 497
R+++ + KV APAR G +AP+ VV+P + +++ + K +G +E
Sbjct: 102 REEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVE 156
Score = 33.5 bits (73), Expect = 0.096
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 232 HQRPPGQHPALEKLLPHIKGNVGFVFTRGDLVEV 333
H G LE L+P + GNVG +FT+GDL EV
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEV 101
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 80.2 bits (189), Expect = 8e-16
Identities = 40/69 (57%), Positives = 47/69 (68%)
Frame = +2
Query: 47 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIALMGKNTMMR 226
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SI LMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 227 KAIKDHLDN 253
+ IK H DN
Sbjct: 64 RCIKVHADN 72
Score = 34.7 bits (76), Expect = 0.042
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 333 RDKLLENKVQAPARPGAIAPLSVVIPATTPASVQRKPXXYKLFSSYQKXKRGLIE 497
R+++ + KV APAR G +AP+ VV+P + +++ + K +G +E
Sbjct: 102 REEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVE 156
Score = 33.5 bits (73), Expect = 0.096
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 232 HQRPPGQHPALEKLLPHIKGNVGFVFTRGDLVEV 333
H G LE L+P + GNVG +FT+GDL EV
Sbjct: 69 HADNTGNKDFLE-LMPLLVGNVGLIFTKGDLKEV 101
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 80.2 bits (189), Expect = 8e-16
Identities = 40/69 (57%), Positives = 47/69 (68%)
Frame = +2
Query: 47 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIALMGKNTMMR 226
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SI LMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 227 KAIKDHLDN 253
+ IK H DN
Sbjct: 64 RCIKVHADN 72
Score = 34.7 bits (76), Expect = 0.042
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 333 RDKLLENKVQAPARPGAIAPLSVVIPATTPASVQRKPXXYKLFSSYQKXKRGLIE 497
R+++ + KV APAR G +AP+ VV+P + +++ + K +G +E
Sbjct: 102 REEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVE 156
Score = 33.5 bits (73), Expect = 0.096
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 232 HQRPPGQHPALEKLLPHIKGNVGFVFTRGDLVEV 333
H G LE L+P + GNVG +FT+GDL EV
Sbjct: 69 HADNTGNKEFLE-LMPLLVGNVGLIFTKGDLKEV 101
>11_06_0399 -
23129476-23129745,23131040-23131121,23131216-23131711,
23132135-23132699,23132825-23132893
Length = 493
Score = 32.7 bits (71), Expect = 0.17
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Frame = +2
Query: 233 IKDHL-DNIQPSRNC-------CHTSRATLASCSPAETXLRS*QTVG-EQSP--GSSSSR 379
+KD DN++PS+ C ++ T A A + + +G E +P S++SR
Sbjct: 210 LKDKFTDNVEPSKESFVFRSSYCEPTKNTAAQAVAAGNGIDHRRDIGTEMTPLGSSTTSR 269
Query: 380 CHCPIVSRH-SRHNT 421
CH PI S +RHNT
Sbjct: 270 CHTPIKSTSPARHNT 284
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 32.7 bits (71), Expect = 0.17
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 5 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 184
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 185 GSS-IALMGKNTM 220
SS I L GK M
Sbjct: 63 SSSRIFLAGKKVM 75
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 17 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 193
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 194 IALMGKNTM 220
I L GK M
Sbjct: 203 IFLAGKKVM 211
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 428 RGRCCGGNDD*QWGNGTGTSWSLDFVLQQFVTTSTRS 318
RG CCG +D ++ T SW + +++F T+ S
Sbjct: 136 RGLCCGPSDIRRFAETTAASWPMPSDIRRFAETTAAS 172
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 428 RGRCCGGNDD*QWGNGTGTSWSLDFVLQQFVTTSTRS 318
RG CCG +D ++ T SW + +++F T+ S
Sbjct: 410 RGLCCGPSDIRRFAETTAASWPMPSDIRRFAETTAAS 446
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = -3
Query: 428 RGRCCGGNDD*QWGNGTGTSWSLDFVLQQFVTTSTRSPRVNTKPTLPLMCGNS 270
RG CCG +D ++ T SW + + L+ V +L CG S
Sbjct: 540 RGLCCGPSDIRRFAETTAASWPMLWTLRYSTFHRINRSFVAYATSLKTSCGPS 592
>10_08_0383 - 17424194-17425567
Length = 457
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 355 KSRLQLVPVPLPHCQSSFPPQHRPRSRENLXLTSSFHPT 471
+S L + P PH PP+H PR R +SS P+
Sbjct: 77 RSLLSRLSPPAPHAPPHPPPRHLPRRRSPFTSSSSSPPS 115
>08_01_0247 - 2036206-2036436
Length = 76
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 419 CCGGNDD*QWGNGTGTSWSLDFVLQQFVTT 330
C GG+DD G G+GTS +D VL+ TT
Sbjct: 4 CEGGSDD--GGRGSGTSVVVDLVLETSATT 31
>06_01_1085 - 8886868-8887556,8887629-8888574
Length = 544
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 185 GSSIALMGKNTMMRKAIKDHLDNIQPSRNCCHTSRATLASC 307
GS AL+ + M +A+ H D++ R HT+R TL C
Sbjct: 83 GSVRALVVSSASMAEAVLRHQDHVFCGRPQQHTARGTLYGC 123
>07_03_1537 +
27562097-27562340,27562436-27562494,27562605-27562680,
27562776-27562847,27562934-27563021,27563118-27563361,
27563490-27563605,27563783-27564000,27564113-27564144,
27564262-27564364,27564471-27564751
Length = 510
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -1
Query: 439 FLWTEAGVVAGMTTDNGAMAPGRAGAWTLFSNSLSRP 329
F + E VA + DNG APGR NS + P
Sbjct: 202 FTFNEPRCVAALGYDNGFHAPGRCSGCDAGGNSTTEP 238
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 68 KSNYFVKIIQLLDEYPKCF 124
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>02_05_0092 + 25749070-25750638
Length = 522
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 357 VQAPARPGAIAPLSVVIPATTPASVQRKP 443
+Q P+ A+AP+ + +P+ T ASV P
Sbjct: 118 IQMPSANPAVAPVQIQMPSETAASVPAAP 146
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +2
Query: 110 YPKCFI--VGADNVGSQQMQQIRISL 181
Y KC I VG DN+ Q MQQ R SL
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSL 1317
>08_01_0594 + 5248020-5248137,5248330-5248886
Length = 224
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +1
Query: 235 QRPPGQHPALEKLLPHIKGNVGFVFTRGDLVEVVTNCWRTKSRLQLVPVPLPHCQSSFPP 414
Q PP HP ++L ++G + F + + + K + + PV L H Q + P
Sbjct: 105 QNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFN-PN 163
Query: 415 QHRP 426
H+P
Sbjct: 164 PHQP 167
>06_01_0004 -
59511-59576,59749-59806,60101-60144,60455-60512,
60810-60867,61165-61222,61871-61928,62225-62282,
62579-62636,62933-62990,63285-63328,63639-63696,
64699-64742,65053-65110,65407-65464,66114-66171,
66468-66818,68051-68108,68405-68462,68759-68816,
69113-69170,69466-69509,69820-70170,71048-71091,
71755-71812,72109-72291,72463-72520,72815-72858,
73877-73920,74584-74641,74938-74995,75292-75349,
75643-75700,75997-76179,76351-76408,76702-76745,
77056-77238,77410-77467,77766-77823,78120-78177,
78473-78530,78826-78869,79180-79362,79534-79591,
79885-79942,80239-80296,80592-80649,80946-81003,
81652-81709,82361-82440,83067-83124,83421-83603,
84127-84184,84480-84537,85188-85245,85541-85598,
85895-85950
Length = 1472
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 428 RGRCCGGNDD*QWGNGTGTSWSL 360
RG+CCG +D ++ T SW +
Sbjct: 297 RGQCCGPSDIRRFAEATAASWPM 319
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 428 RGRCCGGNDD*QWGNGTGTSWSL 360
RG+CCG +D ++ T SW +
Sbjct: 450 RGQCCGPSDIRRFAEATAASWPM 472
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -3
Query: 428 RGRCCGGNDD*QWGNGTGTSWSL 360
RG+CCG +D ++ T SW +
Sbjct: 545 RGQCCGPSDIRRFAEATAASWPM 567
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -3
Query: 428 RGRCCGGNDD*QWGNGTGTSWSLDFVLQ 345
RG+CCG +D ++ T SW + + L+
Sbjct: 978 RGQCCGPSDIRRFAETTAASWPMLWTLR 1005
>04_01_0359 + 4711289-4713052,4713423-4713950
Length = 763
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 416 CGGNDD*QWGNGTGTSWSLDFVLQ 345
CGG DD G+G G WS D +LQ
Sbjct: 31 CGGCDD---GDGGGGIWSTDNILQ 51
>03_05_0674 +
26619579-26619658,26620020-26620746,26620999-26621486,
26621746-26621902,26621975-26621998
Length = 491
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +1
Query: 355 KSRLQLVPVPLPHCQSSFPPQHRPRSRENLXL 450
KSR+Q P P P +SSF HR + R L L
Sbjct: 291 KSRIQRPPTPSP--RSSFSRPHRRQGRPQLLL 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,535,178
Number of Sequences: 37544
Number of extensions: 343830
Number of successful extensions: 1070
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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