Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0718.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 96 1e-20
SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 30 1.2
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.1
SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27) 29 2.8
SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29) 28 3.7
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 27 6.5
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 27 8.6
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 96.3 bits (229), Expect = 1e-20
Identities = 58/133 (43%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Frame = +2
Query: 95 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIALMGKNTMMRKAIKDHLDNIQPSRNC 274
Q LDEYPK F+VG DNVGS+QMQ IR SLRG LMGKNTM+RKAI+ HL+N
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 275 CHTSRATLASCSPAETXLRS*QTVGEQSPGS-SSSRCHCPIVSRHSRHNTGLGPEKTXXL 451
+ + E + + E + + + PI NTGLGPEKT
Sbjct: 61 LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120
Query: 452 QALFILPKXQKGT 490
QAL I K +GT
Sbjct: 121 QALAIPTKIARGT 133
Score = 48.4 bits (110), Expect = 3e-06
Identities = 20/27 (74%), Positives = 24/27 (88%)
Frame = +1
Query: 253 HPALEKLLPHIKGNVGFVFTRGDLVEV 333
+P LEKLLPHIKGN+GFVFT+ DL +V
Sbjct: 54 NPDLEKLLPHIKGNIGFVFTKEDLADV 80
Score = 41.5 bits (93), Expect = 4e-04
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +3
Query: 333 RDKLLENKVQAPARPGAIAPLSVVIPATTPASVQRKPXXYKLFSSYQKXKRGLIE 497
R ++ENKV APA+ G IAP+ V +PA K ++ + K RG IE
Sbjct: 81 RKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIE 135
>SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 401
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 275 CHTSRAT--LASCSPAETXLRS*QTVGEQSPGSSSSRCHCPIVSRHSRHNTGLGP 433
C+ +A +SC P+ + TVG+ S SS+ CP++S S ++ GP
Sbjct: 262 CNNCKAPNHFSSCCPSLGGKKQVHTVGDGSDSDSSAEMVCPVIS-ESINSVSSGP 315
>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 7381
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 109 VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 225
VPKMFH RG+ T+A P + T +L+ R G++ +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895
>SB_9866| Best HMM Match : TP2 (HMM E-Value=0.27)
Length = 1019
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = +1
Query: 196 RAHGKKHYDAQSHQRPPGQHPALEKLLPH-IKGNVGFVFTRG 318
R K Y H RPP +H L PH + N V T G
Sbjct: 243 RVSSKSEYSWADHSRPPSEHSRLGSENPHSVSENSRVVSTAG 284
>SB_17842| Best HMM Match : RVT_1 (HMM E-Value=2.2e-29)
Length = 1167
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 302 SCSPAETXLRS*QTVGEQSPGSSSSRCHCPIVSRHSRHNTGLGP 433
SC P + TVG+ S SS+ CP++S S ++ GP
Sbjct: 239 SCCPRLGGKKQAHTVGDGSDSDSSAEMVCPVIS-ESINSVSSGP 281
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 403 TTDNGAMAPGRAGAWTLFSNSLSRP 329
T D PGRA AW+L+S +L P
Sbjct: 598 TLDGKDQPPGRAWAWSLWSTTLPIP 622
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/70 (22%), Positives = 35/70 (50%)
Frame = +2
Query: 95 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIALMGKNTMMRKAIKDHLDNIQPSRNC 274
++L +C + V S +QQ +S+R + + ++ ++ + +I+P+R C
Sbjct: 204 KVLSRPARCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVSIRPARCC 263
Query: 275 CHTSRATLAS 304
HTS L++
Sbjct: 264 QHTSSKVLST 273
>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1918
Score = 27.1 bits (57), Expect = 8.6
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 286 KGNVGFVFTRGDLVEVVTNCWRTKSRLQLVPVPLPHCQSSFPPQHRPRSRENLXLTSSFH 465
KGN DL +N W T+S +LV + H P H R ++ SS++
Sbjct: 952 KGNKRLTCLVDDLNLSKSNEWSTQSACELVRQHIDHGGVFDPETHEWREVRDVSYLSSYN 1011
Query: 466 P 468
P
Sbjct: 1012 P 1012
>SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -2
Query: 285 DVWQQFLEGWMLSRWSLMALRIIVFFPMSAIL 190
D+W+Q E ++ W+L+ L ++ F +S IL
Sbjct: 440 DMWRQGKERYLSQWWNLVTLAMLGLFIISGIL 471
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,082,338
Number of Sequences: 59808
Number of extensions: 361303
Number of successful extensions: 1072
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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