Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0718.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 116 1e-26
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 29 1.9
U13876-11|AAN63395.1| 201|Caenorhabditis elegans Coenzyme q (ub... 29 1.9
U13876-10|AAN63394.1| 216|Caenorhabditis elegans Coenzyme q (ub... 29 1.9
U13876-9|AAW88395.1| 356|Caenorhabditis elegans Coenzyme q (ubi... 29 1.9
U13876-8|AAN63396.1| 370|Caenorhabditis elegans Coenzyme q (ubi... 29 1.9
U13876-7|AAW88396.1| 427|Caenorhabditis elegans Coenzyme q (ubi... 29 1.9
Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical pr... 27 5.7
X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic int... 27 5.7
U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate fi... 27 5.7
Z83223-1|CAB05718.1| 393|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical pr... 27 7.6
Z47358-10|CAA87438.1| 507|Caenorhabditis elegans Hypothetical p... 27 7.6
Z47356-9|CAA87420.1| 507|Caenorhabditis elegans Hypothetical pr... 27 7.6
U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical pr... 27 7.6
AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAue... 27 7.6
Z74043-12|CAA98548.1| 503|Caenorhabditis elegans Hypothetical p... 27 10.0
Z74040-7|CAA98515.1| 503|Caenorhabditis elegans Hypothetical pr... 27 10.0
U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein. 27 10.0
L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine t... 27 10.0
AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated... 27 10.0
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 116 bits (279), Expect = 1e-26
Identities = 63/152 (41%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Frame = +2
Query: 41 MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIALMGKNTM 220
M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + LMGKNTM
Sbjct: 1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60
Query: 221 MRKAIKDHL-DNIQPSRNCCH-TSRATLASCSPAETXLRS*QTVGEQSPGSSSSRCHCPI 394
+RKA++ HL N + H +RS + + + + + P
Sbjct: 61 IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRS-KLLENRKGAPAKAGAIAPC 119
Query: 395 VSRHSRHNTGLGPEKTXXLQALFILPKXQKGT 490
+ NTG+GPEKT QAL I K +GT
Sbjct: 120 DVKLPPQNTGMGPEKTSFFQALQIPTKIARGT 151
Score = 54.8 bits (126), Expect = 3e-08
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 247 GQHPALEKLLPHIKGNVGFVFTRGDLVEVVTNCWRTKSRLQLVPVPLPHCQSSFPPQHRP 426
G++P+LEKLLPHI NVGFVFT+ DL E+ + + + C PPQ+
Sbjct: 70 GKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTG 129
Query: 427 RSRENLXLTSSFH-PTKXSKG 486
E + PTK ++G
Sbjct: 130 MGPEKTSFFQALQIPTKIARG 150
Score = 40.7 bits (91), Expect = 6e-04
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +3
Query: 333 RDKLLENKVQAPARPGAIAPLSVVIPATTPASVQRKPXXYKLFSSYQKXKRGLIE 497
R KLLEN+ APA+ GAIAP V +P K ++ K RG IE
Sbjct: 99 RSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIE 153
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/74 (25%), Positives = 37/74 (50%)
Frame = +2
Query: 14 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 193
R +L+++ ++ K T K+N ++ +D+Y FI N+ S + IR + +S
Sbjct: 6 RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64
Query: 194 IALMGKNTMMRKAI 235
GKN ++ A+
Sbjct: 65 RFFFGKNNVISIAL 78
>U13876-11|AAN63395.1| 201|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform d protein.
Length = 201
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3
Query: 389 GNGTGTSWSLDFVLQQFVTTSTRSPRVNTKPTLPLMCGNS 270
G+ T TS+SLD +++++TST+ P ++ PT + +S
Sbjct: 20 GSNTSTSYSLDESTKRWISTSTKQP-MSLIPTASSLVASS 58
>U13876-10|AAN63394.1| 216|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform c protein.
Length = 216
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3
Query: 389 GNGTGTSWSLDFVLQQFVTTSTRSPRVNTKPTLPLMCGNS 270
G+ T TS+SLD +++++TST+ P ++ PT + +S
Sbjct: 20 GSNTSTSYSLDESTKRWISTSTKQP-MSLIPTASSLVASS 58
>U13876-9|AAW88395.1| 356|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform a protein.
Length = 356
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3
Query: 389 GNGTGTSWSLDFVLQQFVTTSTRSPRVNTKPTLPLMCGNS 270
G+ T TS+SLD +++++TST+ P ++ PT + +S
Sbjct: 20 GSNTSTSYSLDESTKRWISTSTKQP-MSLIPTASSLVASS 58
>U13876-8|AAN63396.1| 370|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform e protein.
Length = 370
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3
Query: 389 GNGTGTSWSLDFVLQQFVTTSTRSPRVNTKPTLPLMCGNS 270
G+ T TS+SLD +++++TST+ P ++ PT + +S
Sbjct: 20 GSNTSTSYSLDESTKRWISTSTKQP-MSLIPTASSLVASS 58
>U13876-7|AAW88396.1| 427|Caenorhabditis elegans Coenzyme q
(ubiquinone) biosynthesisprotein 2, isoform b protein.
Length = 427
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3
Query: 389 GNGTGTSWSLDFVLQQFVTTSTRSPRVNTKPTLPLMCGNS 270
G+ T TS+SLD +++++TST+ P ++ PT + +S
Sbjct: 20 GSNTSTSYSLDESTKRWISTSTKQP-MSLIPTASSLVASS 58
>Z81136-1|CAB03458.1| 1256|Caenorhabditis elegans Hypothetical
protein W02B8.2 protein.
Length = 1256
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +2
Query: 128 VGADNVGSQQMQQIRISLRGSSIALMGKNTMMRKAIKDHLDNIQPSRNCCHTSR 289
V ADN +++QQI +R + ++ +N +RK + + ++ I+ + H+SR
Sbjct: 547 VKADN---KKLQQILEEVRQNQSKVLEENVKLRKGMAEAIEKIEEFKRNWHSSR 597
>Z81556-6|CAB04523.2| 421|Caenorhabditis elegans Hypothetical
protein F58G1.6 protein.
Length = 421
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 169 PYLATWLQYRAHGKKHYDAQSHQRPPGQHPALEKLL 276
P+ + +R HG YD S+QR + P ++ L
Sbjct: 380 PFAPAYHMFRNHGPPKYDFNSNQRMMAESPPPQRFL 415
>X70833-1|CAA50181.1| 575|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 575
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 14 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 184
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339
Query: 185 GSSIALMGKNTMMRKAIKD 241
G L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358
>U29379-3|AAF99979.3| 558|Caenorhabditis elegans Intermediate
filament, a protein 4 protein.
Length = 558
Score = 27.5 bits (58), Expect = 5.7
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +2
Query: 14 RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 184
RS Y +S R D +W Y +K+ ++ + + + N ++++++R +L R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322
Query: 185 GSSIALMGKNTMMRKAIKD 241
G L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341
>Z83223-1|CAB05718.1| 393|Caenorhabditis elegans Hypothetical
protein E01G4.1 protein.
Length = 393
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 429 PRPVLWRE*RLTMGQWHRDELEPGLCSPTVCHDLN-XVSAGEHEANVALDVWQQFL 265
PRP ++RE ++ W+ +L G P H L V G A + + W+ L
Sbjct: 280 PRPEIYRELPVSKDLWNSFKLSNGSYDPMKLHHLKMNVFRGGLNAELRKEAWKCLL 335
>Z81135-1|CAB03453.1| 627|Caenorhabditis elegans Hypothetical
protein W01G7.1 protein.
Length = 627
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 157 DAADPYLATWLQY--RAH--GKKHYD-AQSHQRPPGQHPALEKLLP 279
D ++ L W ++ +H GK+ YD A HQ PP + PA+E +P
Sbjct: 276 DKSNENLEAWNKFVLNSHRAGKREYDEAAPHQAPP-KRPAMETPVP 320
>Z47358-10|CAA87438.1| 507|Caenorhabditis elegans Hypothetical
protein ZK1307.8 protein.
Length = 507
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 375 DELEPGLCSPTVCHDLNXVSAGEHE--ANVALDVWQQ 271
DE + G+ P +C +L + EHE AN+A +Q+
Sbjct: 113 DEYDSGVDCPNICDELGRAARIEHEKVANIARKGYQK 149
>Z47356-9|CAA87420.1| 507|Caenorhabditis elegans Hypothetical
protein ZK1307.8 protein.
Length = 507
Score = 27.1 bits (57), Expect = 7.6
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 375 DELEPGLCSPTVCHDLNXVSAGEHE--ANVALDVWQQ 271
DE + G+ P +C +L + EHE AN+A +Q+
Sbjct: 113 DEYDSGVDCPNICDELGRAARIEHEKVANIARKGYQK 149
>U53154-2|AAC25856.1| 358|Caenorhabditis elegans Hypothetical
protein C33G8.12 protein.
Length = 358
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 5 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 109
K S ++ +SR+ +EDK + SN+++K QLL E
Sbjct: 159 KLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192
>AY438643-1|AAR00670.1| 627|Caenorhabditis elegans abnormal DAuer
Formation DAF-5,a Ski oncogene homolog involved in a
neuronal TGF betapathway (71.0 kD) (daf-5) protein.
Length = 627
Score = 27.1 bits (57), Expect = 7.6
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 157 DAADPYLATWLQY--RAH--GKKHYD-AQSHQRPPGQHPALEKLLP 279
D ++ L W ++ +H GK+ YD A HQ PP + PA+E +P
Sbjct: 276 DKSNENLEAWNKFVLNSHRAGKREYDEAAPHQAPP-KRPAMETPVP 320
>Z74043-12|CAA98548.1| 503|Caenorhabditis elegans Hypothetical
protein T19B10.1 protein.
Length = 503
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 172 YLATWLQYRAHGKKHYDAQSHQRPPGQHPALEKLLP 279
YLATW+ K+H+ S P HP L P
Sbjct: 15 YLATWIPTLLKYKRHWQYGSKLPGPPAHPIFGNLGP 50
>Z74040-7|CAA98515.1| 503|Caenorhabditis elegans Hypothetical
protein T19B10.1 protein.
Length = 503
Score = 26.6 bits (56), Expect = 10.0
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 172 YLATWLQYRAHGKKHYDAQSHQRPPGQHPALEKLLP 279
YLATW+ K+H+ S P HP L P
Sbjct: 15 YLATWIPTLLKYKRHWQYGSKLPGPPAHPIFGNLGP 50
>U09277-1|AAC13764.1| 532|Caenorhabditis elegans UNC-17 protein.
Length = 532
Score = 26.6 bits (56), Expect = 10.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 267 LEGWMLSRWSLMALRIIVF 211
+ GW+++ W AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435
>L19621-1|AAC14456.1| 532|Caenorhabditis elegans acetylcholine
transporter protein.
Length = 532
Score = 26.6 bits (56), Expect = 10.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 267 LEGWMLSRWSLMALRIIVF 211
+ GW+++ W AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435
>AF036701-4|AAB88371.1| 532|Caenorhabditis elegans Uncoordinated
protein 17, isoform a protein.
Length = 532
Score = 26.6 bits (56), Expect = 10.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 267 LEGWMLSRWSLMALRIIVF 211
+ GW+++ W AL II+F
Sbjct: 417 IAGWIVTNWGFTALNIIIF 435
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,235,180
Number of Sequences: 27780
Number of extensions: 252074
Number of successful extensions: 889
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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