Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0717.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)               35   0.027
SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)         32   0.19 
SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            29   2.3  
SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)                27   9.5  

>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 647

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 153 CDETEWRRTDGSCNNLYYPTRGAYHTPTFRILPAIF 260
           C    +R  DG+CNNL +P  G   TP  R+L  I+
Sbjct: 141 CFHLNYRSADGTCNNLQHPMWGGSLTPLKRLLRPIY 176


>SB_59516| Best HMM Match : An_peroxidase (HMM E-Value=1.5e-11)
          Length = 359

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 144 IQPCD-ETEWRRTDGSCNNLYYPTRGAYHTPTFRILPAIFVKILS 275
           +  CD ++ +R   G CNNL Y   GA +TP  R+    +  ++S
Sbjct: 157 VNKCDRKSPYRTITGVCNNLRYKNWGAANTPFTRVARPAYADMMS 201


>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 150 PCDETEWRRTDGSCNNLYYPTRGAYHTPT 236
           P  E      D + +N+ YPT GA +TPT
Sbjct: 468 PTSEAHGHPLDSTVSNVMYPTPGAGNTPT 496


>SB_30875| Best HMM Match : Rubredoxin (HMM E-Value=1.6)
          Length = 1130

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 435 IQDVMSETTSMAIXSM*YADNCVNXASXANPXVNRL 328
           ++ +     S+A  +M Y D CVN    ANP    L
Sbjct: 319 LEHIQKSALSIASPAMPYRDICVNYVHSANPEKENL 354


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,937,622
Number of Sequences: 59808
Number of extensions: 176707
Number of successful extensions: 258
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)