Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0717.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66520-1|CAA91388.1| 655|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical pr... 35 0.024
Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical pr... 35 0.024
U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical pr... 35 0.024
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr... 35 0.024
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr... 31 0.29
U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical pr... 29 2.1
U80452-2|AAK68180.1| 729|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr... 28 3.6
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr... 28 3.6
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ... 28 3.6
AF022977-1|ABF71715.1| 1285|Caenorhabditis elegans Peroxidasin (... 28 3.6
>Z66520-1|CAA91388.1| 655|Caenorhabditis elegans Hypothetical
protein F49E12.1 protein.
Length = 655
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 141 NIQPCDETEWRRTDGSCNNLYYPTRGAYHTPTFRILPAIF 260
+I C ++R DG+CNNL P +GA T R++PA +
Sbjct: 134 SINQCFHKKYRSMDGTCNNLQNPVKGAAFTAFTRLMPAAY 173
>Z49130-8|CAA88973.1| 1490|Caenorhabditis elegans Hypothetical
protein T06D8.10 protein.
Length = 1490
Score = 35.1 bits (77), Expect = 0.024
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 111 NANIXSXXANNIQPCDETEWRRTDGSCNNLYYPTRGAYHTPTFRIL 248
++ I + I C T +R G CNN+ P GA HTP RI+
Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGICNNVARPEWGASHTPMARIV 186
Score = 30.3 bits (65), Expect = 0.68
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 150 PCDETEWRRT-DGSCNNLYYPTRGAYHTPTFRILP 251
PCD T RT +G CNNL +P P +LP
Sbjct: 840 PCDHTTRYRTFNGWCNNLKFPEYANSFAPLRHLLP 874
>Z49129-3|CAA88963.1| 1490|Caenorhabditis elegans Hypothetical
protein T06D8.10 protein.
Length = 1490
Score = 35.1 bits (77), Expect = 0.024
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 111 NANIXSXXANNIQPCDETEWRRTDGSCNNLYYPTRGAYHTPTFRIL 248
++ I + I C T +R G CNN+ P GA HTP RI+
Sbjct: 141 SSTISNCPIPTIDHCFATNYRSFSGICNNVARPEWGASHTPMARIV 186
Score = 30.3 bits (65), Expect = 0.68
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 150 PCDETEWRRT-DGSCNNLYYPTRGAYHTPTFRILP 251
PCD T RT +G CNNL +P P +LP
Sbjct: 840 PCDHTTRYRTFNGWCNNLKFPEYANSFAPLRHLLP 874
>U20864-7|AAK68357.1| 859|Caenorhabditis elegans Hypothetical
protein F32A5.2b protein.
Length = 859
Score = 35.1 bits (77), Expect = 0.024
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 153 CDETEWRRTDGSCNNLY-YPTRGAYHTPTFRILPAIF 260
C +R DG+CNN+ P RGA + P R+LP I+
Sbjct: 318 CYNAMFRTLDGTCNNMKGEPLRGASYRPYTRLLPTIY 354
>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
protein F32A5.2a protein.
Length = 1000
Score = 35.1 bits (77), Expect = 0.024
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 153 CDETEWRRTDGSCNNLY-YPTRGAYHTPTFRILPAIF 260
C +R DG+CNN+ P RGA + P R+LP I+
Sbjct: 459 CYNAMFRTLDGTCNNMKGEPLRGASYRPYTRLLPTIY 495
>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
protein C46A5.4 protein.
Length = 1432
Score = 31.5 bits (68), Expect = 0.29
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 138 NNIQPCDETEWRRTDGSCNNLYYPTRGAYHTPTFRILPA 254
N I+ C ++R G CNN+ P GA + R LPA
Sbjct: 67 NQIEECVIGKYRSYTGHCNNVKNPLNGASYERLKRFLPA 105
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 150 PCDETEWRRT-DGSCNNLYYPTRGAYHTPTFRIL 248
PCD T RT G CNNL P G T R+L
Sbjct: 782 PCDHTSKYRTYSGWCNNLKNPKFGNAFTQMRRLL 815
>U42833-1|AAA83575.1| 724|Caenorhabditis elegans Hypothetical
protein ZK430.8 protein.
Length = 724
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 153 CDETEWRRTDGSCNNLYYPTRGAYHTPTFRILPA 254
C +R DG+CNNL P +GA R PA
Sbjct: 186 CYHLMYRTLDGTCNNLEKPMQGAAFRRFNRHFPA 219
>U80452-2|AAK68180.1| 729|Caenorhabditis elegans Hypothetical
protein C16C8.2 protein.
Length = 729
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 153 CDETEWRRTDGSCNNLYYPTRGAYHTPTFRI 245
C +R DG+CNNL P G+ T R+
Sbjct: 199 CYHLRYRSFDGTCNNLKKPMIGSAFTALMRL 229
>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 153 CDETEWRRTDGSCNNLYYPTRGAYHTPTFRILP 251
C +++R DG CNN +P G R+LP
Sbjct: 664 CFFSKYRSYDGQCNNHEHPWWGVSEMAFMRLLP 696
>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 27.9 bits (59), Expect = 3.6
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 153 CDETEWRRTDGSCNNLYYPTRGAYHTPTFRILP 251
C +++R DG CNN +P G R+LP
Sbjct: 664 CFFSKYRSYDGQCNNHEHPWWGVSEMAFMRLLP 696
>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
protein K10B4.1 protein.
Length = 1210
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 153 CDETEWRRTDGSCNNLYYPTRGAYHTPTFRILPA 254
C ++R +DG C N+++ G+ ++ R +PA
Sbjct: 88 CLYGKYRHSDGRCTNIFFALSGSAYSSFSRRIPA 121
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +3
Query: 150 PCDETE-WRRTDGSCNNLYYPTRGAYHTPTFRILPAIF 260
PCD T +R G CNNL P+ R+LP +
Sbjct: 655 PCDSTNPYRSYTGWCNNLETPSLANTFRELRRLLPPAY 692
>AF022977-1|ABF71715.1| 1285|Caenorhabditis elegans Peroxidasin
(drosophila peroxidase)homolog protein 1 protein.
Length = 1285
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 150 PCDET----EWRRTDGSCNNLYYPTRGAYHTPTFRILPAIF 260
PC +T +R DG CNN P G P R+L ++
Sbjct: 624 PCTDTCFHHRYRSFDGQCNNKNKPMTGVSLMPLRRLLKPVY 664
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,928,750
Number of Sequences: 27780
Number of extensions: 130393
Number of successful extensions: 220
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -