Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0716.Seq
         (613 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           30   1.3  
05_05_0048 + 21884078-21884951,21885586-21885899                       29   3.8  
09_01_0019 + 403078-404211                                             28   5.1  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    28   6.7  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   8.9  
02_01_0424 - 3097245-3099377                                           27   8.9  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = -3

Query: 515 PIRGLVRVPIGYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVV 342
           P   L   P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ +
Sbjct: 86  PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145

Query: 341 AE 336
            E
Sbjct: 146 IE 147


>05_05_0048 + 21884078-21884951,21885586-21885899
          Length = 395

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 382 DSGEGA*ETATTSKEG---SRRANYPLPARGGSDEK*PIGTLTRPLIGM 519
           + G GA  + TT  EG    RRA  P P  G SD++       RPLIG+
Sbjct: 120 NGGAGASTSQTTGLEGVEVMRRAAAPAPDNGSSDKE----EAARPLIGV 164


>09_01_0019 + 403078-404211
          Length = 377

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 367 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSD 474
           G S  DSG GA ++A   K  SRR  +      GSD
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSD 356


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 476 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLK- 300
           SS PP   S   +RL  +      S AP P  +  +P P +  V ++  I S  G +L  
Sbjct: 6   SSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNLAL 65

Query: 299 -DASPVLDH 276
            D +P   H
Sbjct: 66  FDLAPSPSH 74


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 428 PSLDVVAVSQAPSPESNPDSPLP 360
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


>02_01_0424 - 3097245-3099377
          Length = 710

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -2

Query: 552 NCSSLKIFKVTHSD*RPRKSPDRLFFVTT 466
           NCSSL++ K  H+  R    PD LF VT+
Sbjct: 218 NCSSLRLLKAGHNSLR-GTLPDELFNVTS 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,443,162
Number of Sequences: 37544
Number of extensions: 389276
Number of successful extensions: 974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)