Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0714.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6MB44 Cluster: Putative uncharacterized protein; n=1; ...    33   3.9  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    32   8.9  

>UniRef50_Q6MB44 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Protochlamydia amoebophila UWE25|Rep:
           Putative uncharacterized protein - Protochlamydia
           amoebophila (strain UWE25)
          Length = 304

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 397 AICFFK*ENHSKVWDESSLLCILQKKVMVRVMSNRFP 287
           A  F    N+ K+W E SLLCI  +   V+VMS   P
Sbjct: 81  AFIFLLKNNNHKIWFEFSLLCIRLEAAFVKVMSKLLP 117


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = +1

Query: 454 LLLRQVDELTVHLELSGY 507
           LLLR VDELT HL LSGY
Sbjct: 155 LLLRWVDELTAHLVLSGY 172


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 500,427,650
Number of Sequences: 1657284
Number of extensions: 8691013
Number of successful extensions: 16382
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16381
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)