Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0714.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    23   2.6  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    21   6.0  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   6.0  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.9  

>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 314 GEGNVKQVSVQLFLFGQ 264
           G+  VK+ S QLF FGQ
Sbjct: 5   GKTRVKRASNQLFRFGQ 21


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 106 CGAFILFYLRVF*MILYF 53
           C   I+F+L +F ++LYF
Sbjct: 42  CTIVIIFHLILFAVLLYF 59


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 396 PFVFLNKRTILKYGMSRLYSV 334
           P  F+NK +  K+G   +Y V
Sbjct: 43  PIKFINKSSTDKFGNGAIYEV 63


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 359 YFRMVLLFKKTNGLYIFN 412
           + ++VL+F K   LY FN
Sbjct: 62  HIKIVLMFFKEASLYCFN 79


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,440
Number of Sequences: 336
Number of extensions: 2643
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)