Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0714.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)                  28   5.0  
SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083)                   27   8.7  

>SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)
          Length = 272

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +3

Query: 282 LDGNLFDITLTITFFCKIQSRDDSSHTLEWFSY 380
           L GN+ D+ + + F C  Q +   S++++WF +
Sbjct: 55  LKGNINDVHVCVGFGCGDQGKLKGSNSVDWFGF 87


>SB_17735| Best HMM Match : PAN (HMM E-Value=0.00083)
          Length = 431

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 333 IQSRDDSSHTLEWFSYLKKQMAYISSISETQSHHVTS 443
           I  R+ S  T+EW     +++  +  +  T +HH T+
Sbjct: 288 IGMRNSSGGTVEWLQLTVRELTTLYEVFSTNNHHPTN 324


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,316,475
Number of Sequences: 59808
Number of extensions: 268633
Number of successful extensions: 407
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)