Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0714.Seq
         (598 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    26   0.80 
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    26   0.80 
EF588654-1|ABQ96840.1|  176|Anopheles gambiae transposase protein.     23   9.9  
EF588651-1|ABQ96838.1|  176|Anopheles gambiae transposase protein.     23   9.9  

>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 393 MAYISSISETQSHHVTSFF*FIA*TSGRAH--SSLGVKWVLSP*IYDVNPAPT 545
           + YI ++S T       F  F+  T+   +  S++ +KW  SP I  +NP  T
Sbjct: 48  LKYIGTVSLTLCERAYFFLTFLVVTACSIYFISNVYIKWQSSPIIIGLNPIAT 100


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 26.2 bits (55), Expect = 0.80
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +3

Query: 393 MAYISSISETQSHHVTSFF*FIA*TSGRAH--SSLGVKWVLSP*IYDVNPAPT 545
           + YI ++S T       F  F+  T+   +  S++ +KW  SP I  +NP  T
Sbjct: 48  LKYIGTVSLTLCERAYFFLTFLVVTACSIYFISNVYIKWQSSPIIIGLNPIAT 100


>EF588654-1|ABQ96840.1|  176|Anopheles gambiae transposase
          protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 2  KCVYFLNILNVVK*IISKV*NHL 70
          KC+YFL +    K   S +  HL
Sbjct: 23 KCLYFLKVFKYTKGTTSNLKRHL 45


>EF588651-1|ABQ96838.1|  176|Anopheles gambiae transposase
          protein.
          Length = 176

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 2  KCVYFLNILNVVK*IISKV*NHL 70
          KC+YFL +    K   S +  HL
Sbjct: 23 KCLYFLKVFKYTKGTTSNLKRHL 45


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,921
Number of Sequences: 2352
Number of extensions: 10020
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)