Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0714.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC026301-6|AAY55894.1|  291|Caenorhabditis elegans Hypothetical ...    28   4.4  
AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine re...    28   4.4  

>AC026301-6|AAY55894.1|  291|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.15 protein.
          Length = 291

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 335 TE*RRLIPYFRMVLLFKKTNGLYIFNIRDSISSRHIFFLVYCLDKWTSSQF 487
           +E + ++PYF      K   G+ +++I +   S H F  +  L++W S++F
Sbjct: 148 SEIQSILPYFDA----KSLTGIILWDIPEEPDSSHYFEQITQLEQWKSAKF 194


>AC006767-1|AAF60573.2|  332|Caenorhabditis elegans Serpentine
           receptor, class j protein55 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
 Frame = -3

Query: 338 LYFTEKSYGEGNVKQVSVQLFLFGQIKLVIYV*V-ID------CFFLNL 213
           L FTEKS   GN + + +   LF  I  V+YV V +D      CFFL +
Sbjct: 28  LIFTEKSTNFGNYRYLLLYFALFNLIYSVVYVAVPLDIHSYRYCFFLTV 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,898,943
Number of Sequences: 27780
Number of extensions: 217736
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)