Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0713.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1; ...    46   7e-04
UniRef50_Q61343 Cluster: Beta-D-galactosidase fusion protein; n=...    38   0.24 
UniRef50_Q40538 Cluster: Nicotiana tabacum (clone 5) activating ...    36   0.96 
UniRef50_A2U9U3 Cluster: GCN5-related N-acetyltransferase; n=1; ...    35   1.7  

>UniRef50_A2VBJ9 Cluster: Non-ribosomal peptide synthetase; n=1;
           uncultured bacterium|Rep: Non-ribosomal peptide
           synthetase - uncultured bacterium
          Length = 338

 Score = 46.0 bits (104), Expect = 7e-04
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = -2

Query: 591 GRIGTGPPLEVDGIDKLDIEF 529
           G +GTGPPLEVDGIDKLDIEF
Sbjct: 283 GELGTGPPLEVDGIDKLDIEF 303


>UniRef50_Q61343 Cluster: Beta-D-galactosidase fusion protein; n=1;
           Mus musculus|Rep: Beta-D-galactosidase fusion protein -
           Mus musculus (Mouse)
          Length = 121

 Score = 37.5 bits (83), Expect = 0.24
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = -3

Query: 578 PGPPSRSTVSISLISNS 528
           PGPPSRSTVSISLISNS
Sbjct: 21  PGPPSRSTVSISLISNS 37


>UniRef50_Q40538 Cluster: Nicotiana tabacum (clone 5) activating
           factor DNA sequence; n=2; Eukaryota|Rep: Nicotiana
           tabacum (clone 5) activating factor DNA sequence -
           Nicotiana tabacum (Common tobacco)
          Length = 56

 Score = 35.5 bits (78), Expect = 0.96
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = -2

Query: 588 RIGTGPPLEVDGIDKLDI 535
           + GTGPPLEV GIDKLDI
Sbjct: 20  KAGTGPPLEVRGIDKLDI 37


>UniRef50_A2U9U3 Cluster: GCN5-related N-acetyltransferase; n=1;
           Bacillus coagulans 36D1|Rep: GCN5-related
           N-acetyltransferase - Bacillus coagulans 36D1
          Length = 180

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = -3

Query: 578 PGPPSRSTVSISLISNSR 525
           PGPPSRSTVSISL+ NS+
Sbjct: 3   PGPPSRSTVSISLMFNSK 20


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,922,377
Number of Sequences: 1657284
Number of extensions: 8449441
Number of successful extensions: 16519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16518
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)