Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0713.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate...    28   1.2  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   3.6  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   3.6  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    26   4.8  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   6.3  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    25   6.3  

>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
           transferase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 417 INYILAKVQHSQNRHLQICHDTKY*STMMISVP 515
           +  I  + +H +NR L I HD K+  +++ S P
Sbjct: 10  VQQIHVQARHPKNRLLSIAHDAKFVDSVIASYP 42


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 400 CISFLCRKNAA*FRSTINTNRYFIYS*DLYIDHSRKIICQFIYKENNKIY-CVSFPEAF 227
           CI   C  +A     T N NRY  Y  ++  +  RK IC+   K   K + C    + F
Sbjct: 165 CIKLTCTPDAEIVNFTSNPNRYRFYETNMQ-ELIRKTICEKSDKAIEKTFLCAQLFKTF 222


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 384 VEKTQPSSDRQLTPIDTLYTHKI 316
           VEK+  +S   + P+DTLY +K+
Sbjct: 553 VEKSTSNSKGSMLPLDTLYNNKL 575


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 123 ERESITISKKSFNL*MLFVNYLKI 52
           +R  ITISKK  +L +LF+ +L++
Sbjct: 114 KRLKITISKKRSSLLLLFITFLRL 137


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 414 MKNQYALAFFVEKTQPSSDRQLTPIDTLYTHK 319
           + + YALA F+E   PS DR  T I   Y  K
Sbjct: 156 LADTYALADFLEVISPSEDRDDTLIKCPYFAK 187


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 378 KTQPSSDRQLTPIDTLYTHKIYILIIAERLSVNL 277
           K  P   R L  +   + HK ++ ++ E LS+NL
Sbjct: 184 KYDPEDKRHLIRLYDQFMHKNHLCLVFELLSINL 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,118
Number of Sequences: 5004
Number of extensions: 39514
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)