Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0713.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC071560-1|AAH71560.1| 1024|Homo sapiens tubulin, gamma complex ...    30   5.4  
BC046182-1|AAH46182.1|  477|Homo sapiens TUBGCP5 protein protein.      30   5.4  
AF272884-1|AAK77662.1| 1024|Homo sapiens gamma-tubulin complex c...    30   5.4  
AB067486-1|BAB67792.2| 1032|Homo sapiens KIAA1899 protein protein.     30   5.4  

>BC071560-1|AAH71560.1| 1024|Homo sapiens tubulin, gamma complex
           associated protein 5 protein.
          Length = 1024

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 375 FFLQRKLMHIGSSFINYILAKVQHSQNRHLQ 467
           F L+ KLMH  +S  NYI+ ++ HS     Q
Sbjct: 884 FLLRVKLMHFVNSLHNYIMTRILHSTGLEFQ 914


>BC046182-1|AAH46182.1|  477|Homo sapiens TUBGCP5 protein protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 375 FFLQRKLMHIGSSFINYILAKVQHSQNRHLQ 467
           F L+ KLMH  +S  NYI+ ++ HS     Q
Sbjct: 337 FLLRVKLMHFVNSLHNYIMTRILHSTGLEFQ 367


>AF272884-1|AAK77662.1| 1024|Homo sapiens gamma-tubulin complex
           component GCP5 protein.
          Length = 1024

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 375 FFLQRKLMHIGSSFINYILAKVQHSQNRHLQ 467
           F L+ KLMH  +S  NYI+ ++ HS     Q
Sbjct: 884 FLLRVKLMHFVNSLHNYIMTRILHSTGLEFQ 914


>AB067486-1|BAB67792.2| 1032|Homo sapiens KIAA1899 protein protein.
          Length = 1032

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 375 FFLQRKLMHIGSSFINYILAKVQHSQNRHLQ 467
           F L+ KLMH  +S  NYI+ ++ HS     Q
Sbjct: 892 FLLRVKLMHFVNSLHNYIMTRILHSTGLEFQ 922


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,427,434
Number of Sequences: 237096
Number of extensions: 1109341
Number of successful extensions: 1384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)