Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0713.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical p...    29   1.9  
AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-lik...    27   7.7  

>Z99281-46|CAB54455.3|  795|Caenorhabditis elegans Hypothetical
           protein Y57G11C.32 protein.
          Length = 795

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = -2

Query: 306 IIAERLSVNLSTKRITKFIAFHSQRHLFIVILSI*H*CFYKLYEFYRRNL 157
           + A RLS+N S  R+   +   + RHLF + L   H    K+ E Y++ L
Sbjct: 266 LTASRLSINYSLHRVLLLMLRITYRHLFSIALRENHNNLGKIAERYKKLL 315


>AF043699-2|AAB97567.1|  311|Caenorhabditis elegans Ubiquitin-like
           protease protein 5 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 319 DLYIDHSRKIICQFIYKENNKIYCVSFPEAF 227
           D++    RK++CQ + ++ N + C  F  AF
Sbjct: 231 DMFCTRFRKVVCQKLPQQKNSVDCGIFMMAF 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,308
Number of Sequences: 27780
Number of extensions: 210799
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)