Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0713.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g09090.2 68414.m01015 respiratory burst oxidase protein B (Rb...    29   1.8  
At1g09090.1 68414.m01014 respiratory burst oxidase protein B (Rb...    29   1.8  
At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-contain...    27   9.5  

>At1g09090.2 68414.m01015 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 843

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -2

Query: 294 RLSVNLSTKRITKFIAFHSQRHLFIV--ILSI*H*CF-YKLYEFYRRNLFLIVKLN**LY 124
           R ++  S KR+T F AF    HLF++  +L I H  F Y   E+Y +  ++ + +   LY
Sbjct: 464 RANLPKSLKRLTGFNAFWYSHHLFVIVYVLLIVHGYFVYLSKEWYHKTTWMYLAVPVLLY 523

Query: 123 ERESI 109
             E +
Sbjct: 524 AFERL 528


>At1g09090.1 68414.m01014 respiratory burst oxidase protein B
           (RbohB) / NADPH oxidase identical to respiratory burst
           oxidase protein B from Arabidopsis thaliana [gi:3242783]
          Length = 622

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = -2

Query: 294 RLSVNLSTKRITKFIAFHSQRHLFIV--ILSI*H*CF-YKLYEFYRRNLFLIVKLN**LY 124
           R ++  S KR+T F AF    HLF++  +L I H  F Y   E+Y +  ++ + +   LY
Sbjct: 464 RANLPKSLKRLTGFNAFWYSHHLFVIVYVLLIVHGYFVYLSKEWYHKTTWMYLAVPVLLY 523

Query: 123 ERESI 109
             E +
Sbjct: 524 AFERL 528


>At5g45560.1 68418.m05595 pleckstrin homology (PH) domain-containing
           protein / lipid-binding START domain-containing protein
           weak similarity to SP|P79245 Steroidogenic acute
           regulatory protein, mitochondrial precursor (StAR) {Ovis
           aries}; contains Pfam profiles PF01852: START domain,
           PF00169: PH domain
          Length = 719

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 575 GPPSRSTVSISLISNSRPLSRNGNHHR*LILSV 477
           G P R  V +++ S+S  L + G HH    LS+
Sbjct: 397 GQPIRIPVMVNMASSSLALGKGGKHHHKSSLSI 429


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,366,814
Number of Sequences: 28952
Number of extensions: 175838
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)