Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0712.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    25   0.33 
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.3  

>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 25.4 bits (53), Expect = 0.33
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 106 ISHQEISM*REVCYHFFAHVLEILVEK 26
           I HQE+    + C  F  HV+ +L E+
Sbjct: 157 IYHQELEKYEQACNEFTTHVMNLLREQ 183


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 324 VFPCFNFDIMAQFYVVDVRWNFES*FFLKS 235
           VF C+N   +  FY V + +N    F L S
Sbjct: 47  VFKCYNLRRIYYFYCVSITFNVHLLFLLCS 76


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 205  NAKSIRPYSSGFEEKSAFKIPPYVDYVKLCHDVEIKTW 318
            NAK+  P  +G   ++A     ++ Y ++CH+++ + W
Sbjct: 1658 NAKAPGPGQAGEYTRAA----GFLAYYEICHNIKTQGW 1691


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,814
Number of Sequences: 336
Number of extensions: 2790
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)