Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0712.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    29   0.60 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   2.4  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    27   2.4  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   3.2  
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    25   5.6  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    25   5.6  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.3  
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    25   7.3  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    25   9.7  

>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 28.7 bits (61), Expect = 0.60
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = +2

Query: 362 CKKFTKPLVTWNSW---QESGLKDLWREVTVPXPQ 457
           CKK  K +  W +W   QE  L+  WR  +   PQ
Sbjct: 363 CKKVVKVIEVWKTWIAFQEETLERAWRNFSGNTPQ 397


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 161 HYLLQPDSKFLVSFL--PSSYLSSRNQYVKRGLLP 63
           H L Q  S +    L  P+SYLSS NQY  + + P
Sbjct: 252 HVLQQDQSTYDQKVLMPPASYLSSPNQYTLKNVSP 286


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 GTYYQAGGDNDRAVDPAICDKGLGIMQKASDL 226
           G ++ A GD++   DPA  DK  G M  +SDL
Sbjct: 69  GAFFFAVGDDNAVFDPATLDK-FGNMLGSSDL 99


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 155 LLQPDSKFLVSFLPSSYLSSRNQYVKRGLLPFF 57
           + +P   F++SFL S+Y   +N +    LL FF
Sbjct: 499 IAEPIQSFILSFLRSTYKVLKNDFQVFDLLNFF 531


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 335 SLTWIELKVCKKFTKPLVTWNSWQESGL 418
           SLTW ++K       P ++WN+   +GL
Sbjct: 328 SLTWQQMKAIPNSLVPQLSWNAEVTAGL 355


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 471 VYDXSCGXGTVTSLHRSFNPDSCQEFH 391
           ++D S    T++ LH+SFN  + Q F+
Sbjct: 129 IFDSSPSLKTLSMLHKSFNLHNFQSFY 155


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = +2

Query: 44  KYVGKKMVTDLSLHTDFLMRDKNLAKMTRGTYYQAGGDNDRAVDPAICDKGLGIMQKASD 223
           KY+GK++   L    +   R K+L  +++  ++     ++R     +CD GL   QKA+ 
Sbjct: 15  KYLGKRIRVQLEFKKELAQRSKHLMDVSQCEHW-----HNR-----LCDVGLDSKQKAN- 63

Query: 224 LTAADLR 244
            TA ++R
Sbjct: 64  -TAIEIR 69


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 334 FIDMD-RIESLQEIYETPGDVELLAGIWIERPME 432
           F D+D    + QEIY+ P  V L  G+W+   +E
Sbjct: 80  FCDLDLEFCAQQEIYDHPKVVVLKNGMWMRHVLE 113


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 101 SSRNQYVKRGLLPFF-CPRT*NPRRK 27
           SSRNQ++   LLP++ C     P RK
Sbjct: 17  SSRNQFIINSLLPWYSCSEHEFPHRK 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,378
Number of Sequences: 5004
Number of extensions: 48262
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)