Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0712.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 35 0.049
08_02_0009 + 11216532-11218687,11220727-11225998 35 0.049
08_02_0003 + 11180421-11180757,11180773-11185715 35 0.049
08_02_0002 + 11173365-11173512,11173528-11178470 35 0.049
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 30 1.4
05_01_0106 + 702504-702687,702856-703037,703070-703933 29 3.2
01_05_0677 - 24202037-24202444,24202499-24202795,24202960-242030... 28 5.6
02_01_0411 - 2998806-3000938 27 7.5
08_01_0998 - 10136050-10138356 27 9.9
>11_03_0065 -
9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 34.7 bits (76), Expect = 0.049
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +1
Query: 211 KSIRPYSSGFEEKSAFKIPPYVDYVKLCHDVEIKTWKDMLKFIDMDRIESLQEIYETPGD 390
K + YSS +EE+ I V+ L D EIK + + I+ D +E++ E YE+ +
Sbjct: 563 KDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYESSDE 622
Query: 391 ----VELLAGIWIE 420
++ LAG+ +E
Sbjct: 623 ELDLIDELAGLKVE 636
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 34.7 bits (76), Expect = 0.049
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +1
Query: 211 KSIRPYSSGFEEKSAFKIPPYVDYVKLCHDVEIKTWKDMLKFIDMDRIESLQEIYETPGD 390
K + YSS +EE+ I V+ L D EIK + + I+ D +E++ E YE+ +
Sbjct: 1528 KDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYESSDE 1587
Query: 391 ----VELLAGIWIE 420
++ LAG+ +E
Sbjct: 1588 ELDLIDELAGLKVE 1601
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 34.7 bits (76), Expect = 0.049
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +1
Query: 211 KSIRPYSSGFEEKSAFKIPPYVDYVKLCHDVEIKTWKDMLKFIDMDRIESLQEIYETPGD 390
K + YSS +EE+ I V+ L D EIK + + I+ D +E++ E YE+ +
Sbjct: 812 KDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYESSDE 871
Query: 391 ----VELLAGIWIE 420
++ LAG+ +E
Sbjct: 872 ELDLIDELAGLKVE 885
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 34.7 bits (76), Expect = 0.049
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +1
Query: 211 KSIRPYSSGFEEKSAFKIPPYVDYVKLCHDVEIKTWKDMLKFIDMDRIESLQEIYETPGD 390
K + YSS +EE+ I V+ L D EIK + + I+ D +E++ E YE+ +
Sbjct: 749 KDQKRYSSKYEEQERVLIIDSVNENILVCDDEIKDDESIYSIIETDEVETINEEYESSDE 808
Query: 391 ----VELLAGIWIE 420
++ LAG+ +E
Sbjct: 809 ELDLIDELAGLKVE 822
>09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 152 LQPDSKFLVSFLPSSYLSSRNQYVKRGLLPFF 57
LQPD+ L L Y+ + N Y KR L+ FF
Sbjct: 1366 LQPDTVVLYMALHGIYIHAHNYYSKRNLVRFF 1397
>05_01_0106 + 702504-702687,702856-703037,703070-703933
Length = 409
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +1
Query: 241 EEKSAFKIPPYVDYVKLCHDVEIKTWKDMLKFIDMDRIESLQEIYETPGDVELLAGIWI 417
E + AF ++ + + +E + +D+ K + +DRI +L++ Y + A +W+
Sbjct: 60 EGRKAFAEHKWISWRDINETLEFECLQDLFKTVGIDRIVTLKQDYNEDLIRQFYATVWV 118
>01_05_0677 -
24202037-24202444,24202499-24202795,24202960-24203009,
24204534-24204589,24205751-24206040,24206100-24206488,
24210578-24210818
Length = 576
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/74 (18%), Positives = 34/74 (45%)
Frame = +1
Query: 196 IRNNAKSIRPYSSGFEEKSAFKIPPYVDYVKLCHDVEIKTWKDMLKFIDMDRIESLQEIY 375
I K +++ F + +AF ++ + + E ++ D+ K + +DRI +L++ Y
Sbjct: 62 ISKKGKKPSHHATRFVKSNAFADHKWISWRDINETPEFQSLHDLFKIVGIDRIMTLKQDY 121
Query: 376 ETPGDVELLAGIWI 417
+ +W+
Sbjct: 122 NEDLIRQFYDTVWV 135
>02_01_0411 - 2998806-3000938
Length = 710
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = -3
Query: 366 LQTFNSIHVNEFQHVFPCFNFDIMAQFYVVDVRWNFES*FFLKSAAVRSDAFCIIPNPLS 187
LQ N I N+F FP ++ M+ ++V N + S + S +F +I +
Sbjct: 146 LQVLN-ISSNQFTGAFPSSTWEKMSNLVAINVSNNSFTGHIPSSFCIGSPSFAVIDIGYN 204
Query: 186 QMAGS 172
Q +GS
Sbjct: 205 QFSGS 209
>08_01_0998 - 10136050-10138356
Length = 768
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +2
Query: 251 QLSKFHLTSTT*NCAMMSKLKHGKTC*NSLTWIELKVCKKFTKPLVTWNSWQESGLKDLW 430
++S L +T C+ + ++HG+ + L W PL TW+ S W
Sbjct: 17 RISLLLLLLSTPPCSSSTIIQHGEAE-SLLRWKSTLSAAASASPLTTWSPATSSSACSSW 75
Query: 431 REVT 442
R VT
Sbjct: 76 RGVT 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,792,272
Number of Sequences: 37544
Number of extensions: 305818
Number of successful extensions: 628
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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