Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0712.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44793| Best HMM Match : ENT (HMM E-Value=3.4)                       31   0.62 
SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)               30   1.1  
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_44793| Best HMM Match : ENT (HMM E-Value=3.4)
          Length = 305

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 32  DEDFKYVGKKMVTDLSLHTDFLMRDKNLAKMTRGTYY 142
           DE+ K +  K+VTD ++HTDF++ +  +   TR   Y
Sbjct: 211 DEETKEILMKIVTDSTVHTDFVIENFRIRPNTRIVAY 247


>SB_47801| Best HMM Match : An_peroxidase (HMM E-Value=0)
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +1

Query: 367  EIYETPGDVELLAGIWIERPMEGGYRSXTAAXIINKQLSLTMKADR 504
            E+Y +  DV+L  G   E  +EGG    T A II  Q  +    DR
Sbjct: 1127 EVYPSVDDVDLWVGGLAEEHVEGGCVGETFARIIAMQFKVLRDGDR 1172


>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 16/68 (23%), Positives = 26/68 (38%)
 Frame = -3

Query: 516 SHTMSVSFHSERQLFVYDXSCGXGTVTSLHRSFNPDSCQEFHVTRGFVNFLQTFNSIHVN 337
           +HT    +  E     +  SCG  T   +H +  P SC   H  + F    Q  + +  +
Sbjct: 370 THTGEKPYRCEECDKAFSSSCGLSTHKKIHFNIKPHSCTVCH--KRFATTGQVTSHMRTH 427

Query: 336 EFQHVFPC 313
             +  F C
Sbjct: 428 TGEQPFKC 435


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,231,223
Number of Sequences: 59808
Number of extensions: 365796
Number of successful extensions: 689
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)