Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0710.Seq
         (538 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    26   0.24 
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    26   0.24 
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.1  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    21   9.1  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -3

Query: 464 RLQDVRCRVQFKLISYALHN*LGVGYKFHCTGSXAPSILVGVGNGIVTFIG*VFRFVAIV 285
           R+ + R  + F  I Y LH  L    K         S+LV  GN  ++ +  +FR  A +
Sbjct: 213 RISNRRVFISFSKICY-LHQHLSKSVKLF-NEVFGVSLLVLFGNSFLSIVLALFRTAAEL 270

Query: 284 YSIKTKAVEISFILYPLSSYIFKFVY-CTV 198
            + + K   I+++      +IF  ++ C V
Sbjct: 271 QASQIKWTRIAYMALASVPFIFDSIHLCDV 300


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -3

Query: 464 RLQDVRCRVQFKLISYALHN*LGVGYKFHCTGSXAPSILVGVGNGIVTFIG*VFRFVAIV 285
           R+ + R  + F  I Y LH  L    K         S+LV  GN  ++ +  +FR  A +
Sbjct: 231 RISNRRVFISFSKICY-LHQHLSKSVKLF-NEVFGVSLLVLFGNSFLSIVLALFRTAAEL 288

Query: 284 YSIKTKAVEISFILYPLSSYIFKFVY-CTV 198
            + + K   I+++      +IF  ++ C V
Sbjct: 289 QASQIKWTRIAYMALASVPFIFDSIHLCDV 318


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 9/42 (21%), Positives = 20/42 (47%)
 Frame = +3

Query: 42  IPQHTSGSSVQPGDI*TEQTVPHPAVLGHKYESNGQKVTVPC 167
           +P+ ++ ++ +   + T +  P PAV   + E +G      C
Sbjct: 437 VPEKSTSTTQRTTTVSTTEAPPAPAVSNPQNEVDGSVAPKEC 478


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 493 IEVYENWKKKXW 528
           I  Y  WKKK W
Sbjct: 69  ILAYNFWKKKYW 80


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,094
Number of Sequences: 336
Number of extensions: 3037
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)