Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0710.Seq
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    27   2.3  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   7.2  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.5  

>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 406 LWSA*LMSLNWTRQRTSCKRXIQHVXKDVIEVYENWKKK 522
           L SA L +   T+ RTS +  I ++    ++ Y NW +K
Sbjct: 294 LLSAWLSTQIITKNRTSIRLWIDYLYSTAVDFYTNWIQK 332


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 383 FHCTGSXAPSILVGVGNGIVTFIG*VFRFVA 291
           F+C  +  P+ ++   NG+ T++   F F+A
Sbjct: 202 FNCVLACLPTRIISRINGVATYLNTAFLFIA 232


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 196 GTVQYTNLNMYEDNGYKINEISTAL 270
           GT+ Y   NM ED+   IN +S+ L
Sbjct: 687 GTIPYQAYNMNEDSFIDINTLSSML 711


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 256  SHLSCIHYLRTYLSSCIVLYRNC*RL 179
            S+ SC+H++R   + C++  R+  +L
Sbjct: 3083 SYFSCLHFIRFLNTFCLIFGRDANKL 3108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,192,405
Number of Sequences: 5004
Number of extensions: 44786
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)