Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0710.Seq
(538 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,234... 60 1e-09
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 58 4e-09
03_06_0253 - 32666152-32666360,32666443-32666632,32666764-326668... 55 4e-08
03_06_0252 - 32656068-32656276,32656361-32656550,32656682-326567... 54 5e-08
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934... 53 1e-07
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659... 52 2e-07
07_01_1149 + 10789733-10791209,10791326-10791588,10791745-107919... 40 0.002
05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119 31 0.44
11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,436... 30 1.0
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380... 29 2.3
08_02_1160 - 24793708-24794796,24794888-24794951,24795028-247951... 29 3.1
09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341 28 5.4
05_07_0015 + 27065104-27065428,27065539-27066257 28 5.4
>10_01_0217 + 2337950-2338085,2340766-2342436,2342636-2342898,
2343027-2343236,2343436-2343654,2344038-2345000,
2345279-2345374,2345482-2345580,2345953-2346142,
2346594-2346823
Length = 1358
Score = 60.1 bits (139), Expect = 1e-09
Identities = 29/72 (40%), Positives = 41/72 (56%)
Frame = +1
Query: 10 RRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEVAVN 189
RRVGG +G K ++T VA AC++ +KL RP R+ T+M G R P AKY V
Sbjct: 818 RRVGGGFGGKAMKATHVATACAVAAFKLRRPVRMYLDRKTDMIMAGGRHPMKAKYSVGFK 877
Query: 190 SSGTVQYTNLNM 225
S G + +L++
Sbjct: 878 SDGKITALHLDL 889
>07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 58.0 bits (134), Expect = 4e-09
Identities = 31/80 (38%), Positives = 41/80 (51%)
Frame = +1
Query: 1 VHVRRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEV 180
V RRVGG +G K RS VA AC+L +KL RP RI T+M G R P +Y V
Sbjct: 877 VITRRVGGGFGGKAVRSLPVATACALSAFKLQRPVRIYLDRKTDMIMTGGRHPMKIRYSV 936
Query: 181 AVNSSGTVQYTNLNMYEDNG 240
S G + ++ + + G
Sbjct: 937 GFKSDGNITALHIELLVNAG 956
>03_06_0253 - 32666152-32666360,32666443-32666632,32666764-32666862,
32666999-32667094,32667408-32668361,32668683-32668901,
32669282-32669491,32669617-32669879,32670041-32671717,
32672702-32672852
Length = 1355
Score = 54.8 bits (126), Expect = 4e-08
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +1
Query: 10 RRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEVAVN 189
RRVGG +G K ++ VA AC++ +KL RP R+ T+M G R P KY V
Sbjct: 825 RRVGGGFGGKAMKAIHVAAACAVAAFKLRRPVRMYLDRKTDMIMAGGRHPMKVKYSVGFK 884
Query: 190 SSGTVQYTNLNMYEDNG 240
S G + + ++ + G
Sbjct: 885 SDGKITGLHFDLGMNGG 901
>03_06_0252 - 32656068-32656276,32656361-32656550,32656682-32656780,
32656917-32657012,32657200-32658153,32658476-32658694,
32658911-32659120,32659241-32659503,32659605-32661281,
32663639-32663792
Length = 1356
Score = 54.4 bits (125), Expect = 5e-08
Identities = 26/65 (40%), Positives = 35/65 (53%)
Frame = +1
Query: 10 RRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEVAVN 189
RRVGG +G K ++ VA AC++ +KL RP R+ T+M G R P KY V
Sbjct: 826 RRVGGGFGGKAMKAIHVATACAVAAFKLRRPVRMYLDRKTDMIMAGGRHPMKVKYSVGFK 885
Query: 190 SSGTV 204
S G +
Sbjct: 886 SDGKI 890
>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
17793562-17793620,17794135-17795637,17796478-17796720,
17796831-17797145,17797571-17797573,17798399-17798638,
17798975-17799259,17799335-17799556,17800105-17800266,
17800411-17800545,17802452-17802688,17802787-17802960,
17803692-17803934
Length = 1384
Score = 53.2 bits (122), Expect = 1e-07
Identities = 24/78 (30%), Positives = 43/78 (55%)
Frame = +1
Query: 10 RRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEVAVN 189
+R+GG +G K +RS A A S+ Y L +P +++ +M G+R +L KY+V
Sbjct: 844 KRIGGGFGGKETRSAIFAAAASVAAYCLRQPVKLVLDRDIDMMTTGQRHSFLGKYKVGFT 903
Query: 190 SSGTVQYTNLNMYEDNGY 243
G + +L++Y + G+
Sbjct: 904 DDGKILALDLDVYNNGGH 921
>07_01_1146 + 10756897-10757065,10763869-10765521,10765638-10765900,
10766057-10766266,10766818-10767036,10767379-10768344,
10768575-10768670,10768772-10768870,10769349-10769538,
10769623-10769855
Length = 1365
Score = 52.4 bits (120), Expect = 2e-07
Identities = 28/80 (35%), Positives = 42/80 (52%)
Frame = +1
Query: 1 VHVRRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEV 180
V RR GG +G K RS +A A +L + L RP R+ + T+M +G R P A+Y V
Sbjct: 820 VITRRAGGGFGGKAVRSLHIATAAALCAHTLRRPVRMYLNRNTDMIMVGGRHPMKARYSV 879
Query: 181 AVNSSGTVQYTNLNMYEDNG 240
S G + +L++ + G
Sbjct: 880 GFKSDGKITALHLDLLINAG 899
>07_01_1149 +
10789733-10791209,10791326-10791588,10791745-10791954,
10792398-10792475,10792505-10792705,10792768-10792908,
10794749-10795714,10797824-10797919,10798450-10798638,
10798849-10798956
Length = 1242
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 49 STQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEVAVNSSGTVQYTNLNMY 228
+TQ+A A +L + L RP R+ + T+M +G R P A+Y V G + +L++
Sbjct: 788 TTQIATAAALCAHMLRRPVRMYLNRNTDMIMVGGRHPMKARYSVGFKPDGKITALHLDLL 847
Query: 229 EDNG 240
+ G
Sbjct: 848 INAG 851
>05_03_0268 - 11318114-11318420,11318567-11318885,11318999-11319119
Length = 248
Score = 31.5 bits (68), Expect = 0.44
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 261 YGLSLDAINNC-YKSKNLTYKCYNTVTDTHKNTWCXAPGTMEFIANTEL 404
YGL+ A+++ + + CY DT ++TWC PGT I T L
Sbjct: 54 YGLNNAALSSALFNDGAMCGACYTIACDTSQSTWC-KPGTSITITATNL 101
>11_01_0553 - 4368233-4368320,4368427-4368514,4368595-4368668,
4369000-4369160,4369233-4369322,4369406-4369480,
4369569-4369640,4369719-4369891,4369964-4370078,
4370274-4370387,4370582-4370661,4370755-4370842,
4370941-4370997,4371111-4371176,4371254-4371349,
4371459-4371566,4371941-4372039,4372108-4372227,
4372399-4372437,4372940-4373026,4373276-4373347,
4373443-4373509,4374455-4374546,4374631-4374708,
4374785-4374922,4375029-4375164,4375306-4375468,
4375690-4375849,4375950-4376056,4376149-4376259,
4377850-4378159
Length = 1107
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Frame = +3
Query: 192 FRYSTIHELKYVRR*WIQ----DK*DFYGLSLDAINNCYKSKNLTYKCYNTVTDTHKNTW 359
F Y I + +Y W DK D G+ +NC KNL +C + +
Sbjct: 807 FPYLLISKKRYAGLYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILVDR---- 862
Query: 360 CXAPGTMEFIANT--ELIMERIAYEL 431
PG ++++ NT +L+M R+ L
Sbjct: 863 -DVPGAVQYVKNTISDLLMNRVDLSL 887
>01_01_0517 +
3803740-3806106,3806226-3806312,3806397-3807035,
3807118-3807282,3807363-3807657,3807739-3807953,
3808125-3808430,3808539-3808602,3808735-3808974,
3809150-3809253
Length = 1493
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = -3
Query: 248 ILYPLSSYIFKFVYCTVPELLTATSYLARYGNLLPIAFIFVAK--DC-RMRHGLFSLYVT 78
++Y +S+Y+ ++ ++ + L A G LL +AFI VAK +C RH F L
Sbjct: 317 LVYNVSTYVGPYLIDSLVQYLNGDERYASKGQLLVLAFI-VAKVFECLSQRHWFFRLQQA 375
Query: 77 RLHATATCV 51
+ A + V
Sbjct: 376 GIRARSALV 384
>08_02_1160 -
24793708-24794796,24794888-24794951,24795028-24795146,
24795496-24795612,24796365-24796406,24797342-24797506,
24797806-24797898,24798190-24798291,24798360-24798501,
24799301-24799651,24799741-24799839,24800019-24800230,
24800394-24800429
Length = 876
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 376 QWNL*PTPS*LWSA*LMSLNWTRQRTSCKRXIQHVXKDV 492
QWN+ P P LWS +W R+ + + H+ K+V
Sbjct: 531 QWNMSPPPLSLWS----RSDWARKHKEIAKTMGHISKNV 565
>09_02_0044 - 3471301-3471471,3471804-3472257,3475905-3476341
Length = 353
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/70 (20%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +3
Query: 327 NTVTDTHKNT---WCXAPGTMEFIANTELIMERIAYELELDPAAYVLQTXXTTRYXRRHR 497
NT++ H T + + +F+ +T++ + + E + A+ + ++ R HR
Sbjct: 99 NTISSEHSGTDDSEAQSAPSQDFLCSTQVPYLTLTFNSEEEARAHYNRKFSLKKFLRSHR 158
Query: 498 SLRKLEKEXL 527
++ K EK+ +
Sbjct: 159 AIPKKEKDFI 168
>05_07_0015 + 27065104-27065428,27065539-27066257
Length = 347
Score = 27.9 bits (59), Expect = 5.4
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 142 MGKRLPYLAKYEVAVNSSGTVQYTNLNMYEDNGYKINEISTALVLML*TIATNLKT*PIN 321
MG+ P A +SSG + + +D G + + +L ++ T ATN+ P+
Sbjct: 1 MGREAPSPPPARDAGSSSGQKRKAFTMVDQDGGSEDTWLKLSLGPVIYTDATNVDDSPVT 60
Query: 322 VTIP--LPTPTRILG 360
T P LP P +G
Sbjct: 61 TTFPKELPPPPAAVG 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,446,051
Number of Sequences: 37544
Number of extensions: 293680
Number of successful extensions: 609
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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