Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0710.Seq
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)            66   2e-11
SB_55654| Best HMM Match : Toxin_7 (HMM E-Value=9.7)                   60   9e-10
SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)               56   1e-08
SB_27644| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=3.1e-26)          55   3e-08
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       31   0.79 
SB_41303| Best HMM Match : DUF485 (HMM E-Value=2)                      30   1.4  
SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_50323| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)                 28   5.6  
SB_50322| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-33)                 28   5.6  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  
SB_42362| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_23792| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.3  
SB_41903| Best HMM Match : HRM (HMM E-Value=0.00061)                   27   9.7  
SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)                   27   9.7  
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_8520| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  

>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 30/80 (37%), Positives = 48/80 (60%)
 Frame = +1

Query: 1    VHVRRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEV 180
            V  RR GGA+G K +R+  +A A +L    L+RP R+  +   N++++G R PYL KY+ 
Sbjct: 1430 VVTRRCGGAFGAKATRAAPIACASALAAKILDRPVRLKMNFNKNLESIGGRSPYLLKYKA 1489

Query: 181  AVNSSGTVQYTNLNMYEDNG 240
            A N  G +Q  +++ Y + G
Sbjct: 1490 AFNDDGVLQAVDMDYYINTG 1509


>SB_55654| Best HMM Match : Toxin_7 (HMM E-Value=9.7)
          Length = 194

 Score = 60.5 bits (140), Expect = 9e-10
 Identities = 27/66 (40%), Positives = 41/66 (62%)
 Frame = +1

Query: 58  VAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEVAVNSSGTVQYTNLNMYEDN 237
           V +A  L +    RP R++ +  TNMK +GKR PYL KY+V  + SGT++  ++ MY D 
Sbjct: 41  VPLAPPLTSILRTRPVRMMMNFNTNMKMVGKRTPYLVKYKVGTDDSGTLKGIDMTMYADY 100

Query: 238 GYKINE 255
           G  +N+
Sbjct: 101 GCSVND 106



 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 264 GLSLDAINNCYKSKNLTYKCYNTVTDTHKNTWCXAPGTMEF 386
           G + +  +N Y   N         T+T  NTWC APG + +
Sbjct: 110 GSTYNFCDNAYYCANWKINAIPCRTNTASNTWCRAPGLITY 150


>SB_53911| Best HMM Match : Ald_Xan_dh_C2 (HMM E-Value=0)
          Length = 817

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 26/91 (28%), Positives = 52/91 (57%)
 Frame = +1

Query: 1   VHVRRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEV 180
           V V+R+GG +G K +RS  ++   ++   +  +P R +     +MK  G R P+LA+Y+V
Sbjct: 229 VRVKRMGGGFGGKETRSCWLSAVVAVAASRTGKPVRCMLDRDEDMKTGGTRHPFLARYKV 288

Query: 181 AVNSSGTVQYTNLNMYEDNGYKINEISTALV 273
                G +Q  ++ +Y + G+ + ++S A++
Sbjct: 289 GFTKDGRIQALDIQLYNNAGHSL-DLSRAVM 318


>SB_27644| Best HMM Match : Ald_Xan_dh_C (HMM E-Value=3.1e-26)
          Length = 274

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 29/89 (32%), Positives = 46/89 (51%)
 Frame = +1

Query: 1   VHVRRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEV 180
           +  +RVGGA+G K++  + +A   ++V  K  R  R+  S   ++K  GKR  YL KY+V
Sbjct: 187 IRTKRVGGAFGGKLTNGSAIAATVAVVAQKSGRAARLALSQTEDIKTTGKRGDYLVKYKV 246

Query: 181 AVNSSGTVQYTNLNMYEDNGYKINEISTA 267
                G +Q     +Y  NG    ++S A
Sbjct: 247 GFTDEGKLQALEA-VYYGNGGSALDLSIA 274


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 91  VYMSPGCTLLPLVCCGIFSTRKLHQHGAR 5
           +Y S  C++L L  C I   RK+H H AR
Sbjct: 187 IYFSCSCSMLVLTTCYIKIFRKIHNHQAR 215



 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 91  VYMSPGCTLLPLVCCGIFSTRKLHQHGAR 5
           +Y+S  C++L L  C I   + +H H AR
Sbjct: 619 IYVSCSCSMLVLTTCYIKIFKSIHNHQAR 647


>SB_41303| Best HMM Match : DUF485 (HMM E-Value=2)
          Length = 199

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 151 RLPYLAKYEVAVNSSGTVQYTNLNMYEDNGYKI-NEISTALVL 276
           RLP++   E+A ++ GTV    L  Y   GY I   ++ ALVL
Sbjct: 3   RLPFILPGELAQSAGGTVDRERLKAYAAYGYPIAASLTLALVL 45


>SB_26854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 109 ILQSLATNMKAMG-KRLPYLAKYEVAVNSSGTVQYTNLNMYEDNGYKIN 252
           I+QSL  N + +    LPY +++       G V   N+  +E +GY IN
Sbjct: 24  IVQSLRFNRERITCLHLPYKSRWLYVGTEKGNVHVVNIEKFELSGYTIN 72


>SB_50323| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)
          Length = 411

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 94  SVYMSPGCTLLPLVCCGIFSTRKLHQHGAR 5
           S+Y S  C++L L  C     + +H H AR
Sbjct: 186 SIYFSCSCSMLVLTACYFKIFKSIHNHQAR 215


>SB_50322| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-33)
          Length = 418

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 91  VYMSPGCTLLPLVCCGIFSTRKLHQHGAR 5
           +Y+S  C++L L  C I   + +H H AR
Sbjct: 189 IYVSCSCSMLVLTTCYIKIFKSIHNHQAR 217


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 157  PYLAKYEVAVNSSGTVQYTNLNMYEDNGYK 246
            PY   +E + N + TVQ + +++Y DN ++
Sbjct: 1968 PYYGLFEYSANDTYTVQVSPVSLYVDNSHE 1997


>SB_42362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 272 TKAVEISFILYPLSSYIFKFVYC 204
           TKA +I  IL+ +SS I  F+YC
Sbjct: 259 TKAYQICDILFTVSSLIDPFIYC 281


>SB_23792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 182 ATSYLARYGNLLPIAFIFVAKDCRMRHGLFSLYVTRL 72
           AT  +  +G+ L ++F+ +   C    GLFSLY   L
Sbjct: 8   ATCDIGCHGSKLVVSFMQILGPCASSRGLFSLYFAGL 44


>SB_41903| Best HMM Match : HRM (HMM E-Value=0.00061)
          Length = 139

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 146 PIAFIFVAKDCRMRHGLFSLYVTRLHATATCV 51
           P A +F  K+C   HG F    TR H TATCV
Sbjct: 16  PDAVVFNQKNC---HGSF----TRCHGTATCV 40


>SB_20457| Best HMM Match : fn3 (HMM E-Value=5.1e-12)
          Length = 1114

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 146 PIAFIFVAKDCRMRHGLFSLYVTRLHATATCV 51
           P A +F  K+C   HG F    TR H TATCV
Sbjct: 620 PDAVVFNQKNC---HGSF----TRCHGTATCV 644


>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 84  CHQAARYCHLCAAGYFQPVSSTN 16
           C    RYC  CAAG+  P  +T+
Sbjct: 340 CDLTVRYCSGCAAGFTGPACNTS 362


>SB_8520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 76  LVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEVAVNSSGTVQYTNLN 222
           L+  +L   C+        + A+G    Y++   + VN SGTV++  LN
Sbjct: 14  LLEMELLAVCKESIKTLRTLDALGSLPSYISLDTIMVNPSGTVEFKQLN 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,004,074
Number of Sequences: 59808
Number of extensions: 359331
Number of successful extensions: 736
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)