Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0710.Seq
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    55   3e-08
Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    40   0.001
AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine re...    33   0.17 
Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical...    27   8.6  

>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 26/81 (32%), Positives = 45/81 (55%)
 Frame = +1

Query: 1   VHVRRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEV 180
           V  +R+GG +G K++ ++ +A  C++V  KLNRP     S A ++   GKR    AKY V
Sbjct: 699 VKTKRLGGGFGGKVNNASWIACMCAIVAKKLNRPTYGFLSRADDLAITGKRHEVHAKYRV 758

Query: 181 AVNSSGTVQYTNLNMYEDNGY 243
            +N  G ++  +   + + G+
Sbjct: 759 GINFDGKIEGIHYQAWLNGGW 779


>Z83318-1|CAB05902.1| 1358|Caenorhabditis elegans Hypothetical protein
            F55B11.1 protein.
          Length = 1358

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 24/82 (29%), Positives = 41/82 (50%)
 Frame = +1

Query: 7    VRRVGGAYGLKISRSTQVAVACSLVTYKLNRPCRILQSLATNMKAMGKRLPYLAKYEVAV 186
            V+R+GG +G K S    +AV  SL   K  RP +       +M   G R P+  +Y++AV
Sbjct: 818  VKRIGGGFGGKESTGAILAVPASLAAKKFGRPMKFKFERFDDMAITGTRHPFTLQYKLAV 877

Query: 187  NSSGTVQYTNLNMYEDNGYKIN 252
            + +G     +     ++G+ I+
Sbjct: 878  DENGKFLDLDYTALSNSGHTID 899


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 39.5 bits (88), Expect = 0.001
 Identities = 16/34 (47%), Positives = 25/34 (73%)
 Frame = +1

Query: 1   VHVRRVGGAYGLKISRSTQVAVACSLVTYKLNRP 102
           V  +R+GGA+G K++ ++ +A  CS+V  KLNRP
Sbjct: 731 VKTKRMGGAFGGKLNNASWIACICSVVAKKLNRP 764


>AC006677-3|AAF39952.2|  298|Caenorhabditis elegans Serpentine
           receptor, class x protein28 protein.
          Length = 298

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = -3

Query: 350 LVGVGNGIVTFIG*VFRFVAIVYSI-KTKAVEISFILYPLSSYIFKFVYCTVPELLTATS 174
           + GV   I+TF G +F  ++++Y+I KT ++  SF +   S  +   + C++  L     
Sbjct: 6   ITGVIAFIITFSG-IFINLSVIYAINKTPSMSGSFGIITKSQVVCNMIMCSIYILFVLPL 64

Query: 173 YLARYGNLLPIAFIF 129
            L+   + +PI+  F
Sbjct: 65  QLSSLSHFIPISHYF 79


>Z83226-1|CAB05724.2|  252|Caenorhabditis elegans Hypothetical
           protein F43D2.1 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 12  PCWWSLRVENIPQHT 56
           PCWWS  V N PQ +
Sbjct: 209 PCWWSADVSNWPQES 223


>U43283-1|AAC69025.1|  412|Caenorhabditis elegans Hypothetical
           protein T25G12.5 protein.
          Length = 412

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +3

Query: 264 GLSLDAINNCYKSKNLTYKCYNTVTDTHKNTWCXAP 371
           GL +D ++NC  S+ + Y C    T    N     P
Sbjct: 84  GLGVDMVSNCIISEEMAYGCSGIATAIMANDLALTP 119


>AC024790-14|ABA61861.1|  417|Caenorhabditis elegans Hypothetical
           protein Y47D7A.16 protein.
          Length = 417

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -3

Query: 335 NGIVTFIG*VFRFVAIVYSIKTK--AVEISFILYPLSSYIFKFV 210
           NGIVT +     +  +VYS  T   AV +S ++ PL+SY+  FV
Sbjct: 276 NGIVTSVQ---SYATLVYSQNTYHYAVTLSNVISPLASYLQFFV 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,261
Number of Sequences: 27780
Number of extensions: 259726
Number of successful extensions: 571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)