Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0709.Seq
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973...    33   0.087
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377...    29   1.9  
06_03_1258 + 28796643-28798169                                         28   3.3  
01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165     28   3.3  
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644...    27   5.7  

>03_06_0716 -
           35695158-35696795,35697075-35697288,35697290-35697372,
           35697695-35697865
          Length = 701

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 202 ESDQLTIRPLGAGQEVGSHASCWSSKGK 285
           E DQL I PLGAG EVG      S KG+
Sbjct: 27  EGDQLIITPLGAGNEVGRSCVYMSFKGR 54


>09_04_0020 +
           13837257-13837281,13837364-13837550,13837655-13837727,
           13837769-13837804,13838161-13838281,13838399-13838472,
           13838594-13838730,13839262-13839325,13839693-13839758,
           13840061-13840130,13840206-13840310,13840840-13840981,
           13841343-13841439,13841939-13842460
          Length = 572

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 252 QSCIMLEFKG-KXIMLDCGXHPG 317
           +SC+++ F G K +M DCG H G
Sbjct: 16  KSCVVVTFGGGKRVMFDCGMHMG 38


>06_03_1258 + 28796643-28798169
          Length = 508

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 186 SSACGGKRSIDNKTTWSWPR--SWQSCIMLEFK 278
           SS+ GG  S  +   W+ P    WQ C+ LEF+
Sbjct: 130 SSSFGGSFSSSSSRRWAPPPIDGWQRCLRLEFR 162


>01_05_0122 + 18366119-18367014,18367042-18367397,18367471-18368165
          Length = 648

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 150 KQNDYKSKKRH*SSACGGKRSIDNKTTWSWPR 245
           ++ DY+ K +    ACG       +  W+WPR
Sbjct: 617 EKEDYEEKLKELEDACGPVHGGRARDIWTWPR 648


>04_01_0490 -
           6440176-6440448,6440785-6441074,6441156-6441304,
           6441432-6441890,6441973-6442269,6442604-6443502,
           6443793-6443827,6443984-6444078,6444184-6444247,
           6446099-6446175,6446330-6446514
          Length = 940

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -2

Query: 246 FLASSKWSYCQLIAFLRRHWISAFSWICSHFVYLXIFIYRDLTNSLIT 103
           +L   +     L  FL R  I  FS I    VYL +F Y +   S IT
Sbjct: 772 YLRERESGMSSLAYFLARDTIDHFSTIVKPIVYLSMFYYFNNPRSTIT 819


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,893,929
Number of Sequences: 37544
Number of extensions: 155011
Number of successful extensions: 252
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)