Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0709.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     29   1.1  
SB_36071| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-27)                 29   1.9  
SB_36073| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-27)                 27   4.5  
SB_4665| Best HMM Match : 7tm_2 (HMM E-Value=2.5e-11)                  27   4.5  

>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 148 INKMTTNPRKGTDPVPAEESDQLTIRPLGAGQEVGSHASCWSSKG 282
           +N+  T  RKG+ P P  ES+ L +   G  +E+GS  +    KG
Sbjct: 65  LNRADTLQRKGSYPPPPGESEILGLEVSGIVEELGSACNLGWRKG 109


>SB_36071| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-27)
          Length = 310

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 254 LPTSWPAPSGLIVN*SLSSAGTGSVPFLGFVVILFIYXYSF 132
           LP SW A   L+V+    S           V ILF+Y Y F
Sbjct: 131 LPISWKADQSLLVHKIYVSCAVALFLVFPLVFILFVYSYIF 171


>SB_36073| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-27)
          Length = 305

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 254 LPTSWPAPSGLIVN*SLSSAGTGSVPFLGFVVILFIYXYSF 132
           LP +W A   L+V+    S           V ILF+Y Y F
Sbjct: 125 LPITWKADQSLLVHKIYVSCAVALFLVFPLVFILFVYSYIF 165


>SB_4665| Best HMM Match : 7tm_2 (HMM E-Value=2.5e-11)
          Length = 213

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 219 CQLIAFLRRH-WISAFSWICSHFVYLXIFIYRDLTNSLIT 103
           CQ+IA L  + W+++F+W+    V L + + +      IT
Sbjct: 14  CQIIAALLHYLWLASFAWMALEGVMLYLMLVKVFGTKTIT 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,210,551
Number of Sequences: 59808
Number of extensions: 175163
Number of successful extensions: 349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)