Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0709.Seq
(409 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein. 51 2e-06
BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and polyadenyl... 51 2e-06
BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and polyadenyl... 51 2e-06
AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and polyadenyl... 51 2e-06
AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and polyadenyl... 51 2e-06
AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein. 51 2e-06
CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein. 34 0.21
BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein. 34 0.21
BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein. 34 0.21
BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and polyadenyl... 34 0.21
AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and polyadeny... 34 0.21
AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and polyadeny... 34 0.21
AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and polyadeny... 34 0.21
AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and polyadenyl... 34 0.21
AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and polyadenyl... 34 0.21
AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and polyadenyl... 34 0.21
AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and polyadenyl... 34 0.21
AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens ... 34 0.21
AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens ... 34 0.21
>BC030988-1|AAH30988.1| 554|Homo sapiens CPSF3 protein protein.
Length = 554
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +1
Query: 190 VPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTALPFIDLXEAD* 369
+PAEESDQL IRPLGAGQEVG KG+ ALP+IDL +
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 370 VDL 378
+DL
Sbjct: 64 IDL 66
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXGXDS 335
+SCI+LEFKG+ IMLDCG HPGL G D+
Sbjct: 25 RSCIILEFKGRKIMLDCGIHPGLEGMDA 52
>BC020211-1|AAH20211.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +1
Query: 190 VPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTALPFIDLXEAD* 369
+PAEESDQL IRPLGAGQEVG KG+ ALP+IDL +
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 370 VDL 378
+DL
Sbjct: 64 IDL 66
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXGXDS 335
+SCI+LEFKG+ IMLDCG HPGL G D+
Sbjct: 25 RSCIILEFKGRKIMLDCGIHPGLEGMDA 52
>BC011654-1|AAH11654.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa protein.
Length = 684
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +1
Query: 190 VPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTALPFIDLXEAD* 369
+PAEESDQL IRPLGAGQEVG KG+ ALP+IDL +
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 370 VDL 378
+DL
Sbjct: 64 IDL 66
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXGXDS 335
+SCI+LEFKG+ IMLDCG HPGL G D+
Sbjct: 25 RSCIILEFKGRKIMLDCGIHPGLEGMDA 52
>AK223487-1|BAD97207.1| 684|Homo sapiens cleavage and
polyadenylation specific factor 3, 73kDa variant
protein.
Length = 684
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +1
Query: 190 VPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTALPFIDLXEAD* 369
+PAEESDQL IRPLGAGQEVG KG+ ALP+IDL +
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 370 VDL 378
+DL
Sbjct: 64 IDL 66
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXGXDS 335
+SCI+LEFKG+ IMLDCG HPGL G D+
Sbjct: 25 RSCIILEFKGRKIMLDCGIHPGLEGMDA 52
>AF171877-1|AAF00224.1| 684|Homo sapiens cleavage and
polyadenylation specificity factor 73 kDa subunit
protein.
Length = 684
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +1
Query: 190 VPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTALPFIDLXEAD* 369
+PAEESDQL IRPLGAGQEVG KG+ ALP+IDL +
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 370 VDL 378
+DL
Sbjct: 64 IDL 66
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXGXDS 335
+SCI+LEFKG+ IMLDCG HPGL G D+
Sbjct: 25 RSCIILEFKGRKIMLDCGIHPGLEGMDA 52
>AC080162-3|AAY14858.1| 684|Homo sapiens unknown protein.
Length = 684
Score = 50.8 bits (116), Expect = 2e-06
Identities = 29/63 (46%), Positives = 34/63 (53%)
Frame = +1
Query: 190 VPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTALPFIDLXEAD* 369
+PAEESDQL IRPLGAGQEVG KG+ ALP+IDL +
Sbjct: 4 IPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE 63
Query: 370 VDL 378
+DL
Sbjct: 64 IDL 66
Score = 50.4 bits (115), Expect = 2e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXGXDS 335
+SCI+LEFKG+ IMLDCG HPGL G D+
Sbjct: 25 RSCIILEFKGRKIMLDCGIHPGLEGMDA 52
>CR533557-1|CAG38588.1| 600|Homo sapiens FLJ20542 protein.
Length = 600
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 17 RSCILVSIAGKNVMLDCGMHMG 38
>BC020199-1|AAH20199.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 17 RSCILVSIAGKNVMLDCGMHMG 38
>BC008041-1|AAH08041.1| 389|Homo sapiens CPSF3L protein protein.
Length = 389
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 17 RSCILVSIAGKNVMLDCGMHMG 38
>BC007978-1|AAH07978.1| 600|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 600
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 17 RSCILVSIAGKNVMLDCGMHMG 38
>AL139287-12|CAI23182.1| 308|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 308
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 36 RSCILVSIAGKNVMLDCGMHMG 57
>AL139287-11|CAI23181.1| 283|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 283
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 84 RSCILVSIAGKNVMLDCGMHMG 105
>AL139287-10|CAI23180.1| 379|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 379
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 24 RSCILVSIAGKNVMLDCGMHMG 45
>AL139287-9|CAI23178.1| 401|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 401
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 29 RSCILVSIAGKNVMLDCGMHMG 50
>AL139287-7|CAI23176.1| 514|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 514
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 32 RSCILVSIAGKNVMLDCGMHMG 53
>AL139287-6|CAI23177.1| 627|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 627
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 44 RSCILVSIAGKNVMLDCGMHMG 65
>AL139287-5|CAI23174.1| 598|Homo sapiens cleavage and
polyadenylation specific factor 3-like protein.
Length = 598
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 37 RSCILVSIAGKNVMLDCGMHMG 58
>AK023356-1|BAB14541.1| 278|Homo sapiens protein ( Homo sapiens
cDNA FLJ13294 fis, clone OVARC1001232, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 278
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 17 RSCILVSIAGKNVMLDCGMHMG 38
>AK021939-1|BAB13943.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ11877 fis, clone HEMBA1007087, weakly similar to
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KD
SUBUNIT. ).
Length = 499
Score = 33.9 bits (74), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
+SCI++ GK +MLDCG H G
Sbjct: 17 RSCILVSIAGKNVMLDCGMHMG 38
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,736,050
Number of Sequences: 237096
Number of extensions: 936026
Number of successful extensions: 1177
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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