Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0709.Seq
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical ...    48   3e-06
Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical pr...    33   0.10 
AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear recep...    26   9.1  
AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer...    26   9.1  
AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer ...    26   9.1  
AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormo...    26   9.1  

>AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical
           protein Y67H2A.1 protein.
          Length = 707

 Score = 47.6 bits (108), Expect = 3e-06
 Identities = 18/28 (64%), Positives = 23/28 (82%)
 Frame = +3

Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXGXDS 335
           +SC +LE+KGK +MLDCG HPGL G D+
Sbjct: 24  RSCHLLEYKGKRVMLDCGVHPGLHGVDA 51



 Score = 37.5 bits (83), Expect = 0.004
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = +1

Query: 199 EESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTALPFIDLXEAD*VDL 378
           + SD L   PLG+GQEVG        KGK                ALPF+D  E + +DL
Sbjct: 6   DNSDSLCFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIENIDL 65


>Z48334-7|CAB54223.2|  608|Caenorhabditis elegans Hypothetical
           protein F10B5.8 protein.
          Length = 608

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
           +SCI++   GK IM+DCG H G
Sbjct: 21  RSCILITIGGKNIMVDCGMHMG 42


>AF273830-1|AAG15179.1|  598|Caenorhabditis elegans nuclear receptor
           NHR-88 protein.
          Length = 598

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 216 QLIAFLRRHWISAFSWICSHFVYLXIFIYRDLTNSLITIR*XFVV 82
           QLIA LRR+ +SA  WI + F    +    D T  L ++   F +
Sbjct: 224 QLIAALRRYVLSAVHWIDALFNLAHLTEIHDKTTLLKSVIGPFTI 268


>AF099920-10|AAO91710.1| 1051|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform b protein.
          Length = 1051

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 243 LASSKWSYCQLIAFLRRHWISAFSWICSHFVY 148
           L   +WSY ++  FLR  +   F++  ++F Y
Sbjct: 636 LVHGRWSYIRMAKFLRYFFYKNFAFTLTNFWY 667


>AF099920-9|AAK29849.1| 1222|Caenorhabditis elegans Transbilayer
           amphipath transporters(subfamily iv p-type atpase)
           protein 2, isoform a protein.
          Length = 1222

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 243 LASSKWSYCQLIAFLRRHWISAFSWICSHFVY 148
           L   +WSY ++  FLR  +   F++  ++F Y
Sbjct: 807 LVHGRWSYIRMAKFLRYFFYKNFAFTLTNFWY 838


>AC006671-1|AAF39914.2|  593|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform a protein.
          Length = 593

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 216 QLIAFLRRHWISAFSWICSHFVYLXIFIYRDLTNSLITIR*XFVV 82
           QLIA LRR+ +SA  WI + F    +    D T  L ++   F +
Sbjct: 219 QLIAALRRYVLSAVHWIDALFNLAHLTEIHDKTTLLKSVIGPFTI 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,549,504
Number of Sequences: 27780
Number of extensions: 128051
Number of successful extensions: 257
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)