Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0709.Seq
         (409 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61010.2 68414.m06870 cleavage and polyadenylation specificit...    37   0.006
At1g61010.1 68414.m06869 cleavage and polyadenylation specificit...    37   0.006
At2g01730.1 68415.m00101 metallo-beta-lactamase family protein s...    32   0.17 
At3g23080.1 68416.m02909 expressed protein weak similarity to SP...    27   4.8  
At1g50900.1 68414.m05723 expressed protein                             26   8.5  

>At1g61010.2 68414.m06870 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXG 326
           +SC+ + F+GK I+ DCG HP   G
Sbjct: 35  RSCVYMSFRGKNILFDCGIHPAYSG 59



 Score = 35.9 bits (79), Expect = 0.010
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 160 TTNPRKGTDPVPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTAL 339
           +T+ ++   P+ + + DQL + PLGAG EVG      S +GK   +            AL
Sbjct: 5   STSLKRREQPI-SRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAAL 63

Query: 340 PFIDLXEAD*VDL 378
           P+ D  +   +D+
Sbjct: 64  PYFDEIDPSSIDV 76


>At1g61010.1 68414.m06869 cleavage and polyadenylation specificity
           factor, putative similar to cleavage and polyadenylation
           specificity factor 73 kDa subunit [Homo sapiens]
           SWISS-PROT:Q9UKF6
          Length = 693

 Score = 36.7 bits (81), Expect = 0.006
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXG 326
           +SC+ + F+GK I+ DCG HP   G
Sbjct: 35  RSCVYMSFRGKNILFDCGIHPAYSG 59



 Score = 35.9 bits (79), Expect = 0.010
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = +1

Query: 160 TTNPRKGTDPVPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTAL 339
           +T+ ++   P+ + + DQL + PLGAG EVG      S +GK   +            AL
Sbjct: 5   STSLKRREQPI-SRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAAL 63

Query: 340 PFIDLXEAD*VDL 378
           P+ D  +   +D+
Sbjct: 64  PYFDEIDPSSIDV 76


>At2g01730.1 68415.m00101 metallo-beta-lactamase family protein
           simliar to SP|P79101 Cleavage and polyadenylation
           specificity factor, 73 kDa subunit (CPSF 73 kDa subunit)
           {Bos taurus}; contains Pfam profile PF00753:
           Metallo-beta-lactamase superfamily
          Length = 613

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317
           +SC+++   GK IM DCG H G
Sbjct: 16  KSCVVVTINGKKIMFDCGMHMG 37


>At3g23080.1 68416.m02909 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 419

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 231 WSWPRSWQSCIMLEFKGKXIMLDCGXHPG 317
           WSW   W S + L F+ K   L C   PG
Sbjct: 39  WSWRPRWTSLVYLGFRSKLRFL-CTVPPG 66


>At1g50900.1 68414.m05723 expressed protein
          Length = 175

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 211 QLTIRPLGAGQEVGSHASCWSSKGK 285
           +L IRP   G   GS  +CW   GK
Sbjct: 40  KLRIRPARLGPSNGSRTTCWFKFGK 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,209,424
Number of Sequences: 28952
Number of extensions: 122987
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)