BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0709.Seq (409 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g61010.2 68414.m06870 cleavage and polyadenylation specificit... 37 0.006 At1g61010.1 68414.m06869 cleavage and polyadenylation specificit... 37 0.006 At2g01730.1 68415.m00101 metallo-beta-lactamase family protein s... 32 0.17 At3g23080.1 68416.m02909 expressed protein weak similarity to SP... 27 4.8 At1g50900.1 68414.m05723 expressed protein 26 8.5 >At1g61010.2 68414.m06870 cleavage and polyadenylation specificity factor, putative similar to cleavage and polyadenylation specificity factor 73 kDa subunit [Homo sapiens] SWISS-PROT:Q9UKF6 Length = 693 Score = 36.7 bits (81), Expect = 0.006 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXG 326 +SC+ + F+GK I+ DCG HP G Sbjct: 35 RSCVYMSFRGKNILFDCGIHPAYSG 59 Score = 35.9 bits (79), Expect = 0.010 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = +1 Query: 160 TTNPRKGTDPVPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTAL 339 +T+ ++ P+ + + DQL + PLGAG EVG S +GK + AL Sbjct: 5 STSLKRREQPI-SRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAAL 63 Query: 340 PFIDLXEAD*VDL 378 P+ D + +D+ Sbjct: 64 PYFDEIDPSSIDV 76 >At1g61010.1 68414.m06869 cleavage and polyadenylation specificity factor, putative similar to cleavage and polyadenylation specificity factor 73 kDa subunit [Homo sapiens] SWISS-PROT:Q9UKF6 Length = 693 Score = 36.7 bits (81), Expect = 0.006 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 252 QSCIMLEFKGKXIMLDCGXHPGLXG 326 +SC+ + F+GK I+ DCG HP G Sbjct: 35 RSCVYMSFRGKNILFDCGIHPAYSG 59 Score = 35.9 bits (79), Expect = 0.010 Identities = 21/73 (28%), Positives = 35/73 (47%) Frame = +1 Query: 160 TTNPRKGTDPVPAEESDQLTIRPLGAGQEVGSHASCWSSKGKX*CWTVAXILDXLXWTAL 339 +T+ ++ P+ + + DQL + PLGAG EVG S +GK + AL Sbjct: 5 STSLKRREQPI-SRDGDQLIVTPLGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAAL 63 Query: 340 PFIDLXEAD*VDL 378 P+ D + +D+ Sbjct: 64 PYFDEIDPSSIDV 76 >At2g01730.1 68415.m00101 metallo-beta-lactamase family protein simliar to SP|P79101 Cleavage and polyadenylation specificity factor, 73 kDa subunit (CPSF 73 kDa subunit) {Bos taurus}; contains Pfam profile PF00753: Metallo-beta-lactamase superfamily Length = 613 Score = 31.9 bits (69), Expect = 0.17 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 252 QSCIMLEFKGKXIMLDCGXHPG 317 +SC+++ GK IM DCG H G Sbjct: 16 KSCVVVTINGKKIMFDCGMHMG 37 >At3g23080.1 68416.m02909 expressed protein weak similarity to SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP) {Homo sapiens} Length = 419 Score = 27.1 bits (57), Expect = 4.8 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +3 Query: 231 WSWPRSWQSCIMLEFKGKXIMLDCGXHPG 317 WSW W S + L F+ K L C PG Sbjct: 39 WSWRPRWTSLVYLGFRSKLRFL-CTVPPG 66 >At1g50900.1 68414.m05723 expressed protein Length = 175 Score = 26.2 bits (55), Expect = 8.5 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +1 Query: 211 QLTIRPLGAGQEVGSHASCWSSKGK 285 +L IRP G GS +CW GK Sbjct: 40 KLRIRPARLGPSNGSRTTCWFKFGK 64 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,209,424 Number of Sequences: 28952 Number of extensions: 122987 Number of successful extensions: 181 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 174 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 181 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 605614832 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -