Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0708.Seq
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyce...    27   2.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.0  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    26   5.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.0  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   6.6  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.8  

>SPAC56F8.05c |mug64||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 401 FYNVVTGKTLALPNLIALQHIPLSPAGVIAEEARPDALPN 520
           F   V+GK   L NL  L+  PL+  G   EE    A P+
Sbjct: 98  FGKTVSGKVRNLGNLTPLEQTPLASVGKNLEEKEAAAKPS 137


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -3

Query: 336  RSTVSISLISNSRPLPVVIC--LSQRLSHDVSVQAVLRRY 223
            R  + +SL++  R LP +    L   LS  V+++AVLR+Y
Sbjct: 1509 RIEIIVSLVNVFRDLPPLSAQFLGDLLSSVVNIEAVLRKY 1548


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 463 PPFASWRNSRRGPPRCPSQQLRSLNGEWAN 552
           PP AS RN R      PS+Q  S+N E AN
Sbjct: 353 PPGASGRNRRERTSSTPSEQSTSVN-ETAN 381


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = -3

Query: 339 SRSTVSISLISNSRPLPVVICLSQRLSHDVSVQAVLRRYREWLN 208
           S  T  +  I+N  PLP V+  +  L++  +  +++   R++LN
Sbjct: 192 STYTTPLQSINNEHPLPTVLENNALLNNSGNSPSLINHLRQYLN 235


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/34 (26%), Positives = 21/34 (61%)
 Frame = -3

Query: 294 LPVVICLSQRLSHDVSVQAVLRRYREWLNISVLV 193
           LP+V C++Q  ++D  ++A+   +  W ++  +V
Sbjct: 310 LPLVNCIAQVAANDTELEAIKFTFAFWWDLKQMV 343


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 218 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 114
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,339
Number of Sequences: 5004
Number of extensions: 43302
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)