Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0708.Seq
         (617 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0874 + 12017069-12018051,12018137-12018316,12018421-120186...    31   0.55 
07_03_0768 + 21368058-21368624                                         30   1.3  
06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592           29   3.0  
05_02_0116 + 6773659-6774437,6775103-6775298,6775381-6775565,677...    28   5.2  
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931...    27   9.0  
01_01_1008 - 7987936-7988628,7988923-7989102                           27   9.0  

>03_02_0874 +
           12017069-12018051,12018137-12018316,12018421-12018600,
           12018718-12018797,12018999-12019259,12019360-12019474,
           12019631-12019855,12020840-12020849
          Length = 677

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 454 AAHPPFA-SWRNSRRGPPRCPSQQLRSLNGEWANCKP 561
           AAH PF  S +NS RGP   PS    S    WA  +P
Sbjct: 79  AAHSPFLLSRQNSGRGPAPSPSPLSASSPSSWAQAQP 115


>07_03_0768 + 21368058-21368624
          Length = 188

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 357 WVPGPPSRSTVSISLISNSRPLPVVICLSQRLSHDVSVQAVLRRYRE 217
           W+  PPS S+      + SR  P+   LSQR +  V+  A+  R RE
Sbjct: 14  WLRSPPSSSSAGAFSSAPSRGCPLHAALSQRCAPAVASLALYYRIRE 60


>06_01_1001 + 7783072-7783493,7783530-7784212,7784582-7784592
          Length = 371

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 390 VNCNTTHYRANWVPGPPSRSTVSISLISNSRPLPVVICLSQRLSH 256
           + C++ H RA ++  PP +  V   +    RPL  V+C      H
Sbjct: 109 IPCDSRHGRALFITQPPLQLLVLDPITGMERPLAAVLCAVDGCGH 153


>05_02_0116 +
           6773659-6774437,6775103-6775298,6775381-6775565,
           6775746-6776079,6776174-6776378,6776692-6776834,
           6777081-6777233
          Length = 664

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 421 ENPGVTQLNRLAAHPPFASWRNSRRGPPR-CPSQQL 525
           ENP VTQL  +   P F  +++  R     CPS QL
Sbjct: 619 ENPTVTQLENVKTVPTFKIYKDGTRVMEMICPSHQL 654


>06_03_0473 + 21190878-21191188,21191269-21192355,21192972-21193194,
            21193286-21193356,21193385-21193441,21193442-21194056,
            21194168-21194237,21194470-21194745,21194916-21195130,
            21195224-21195529,21195750-21195813,21195902-21196141,
            21196306-21196415
          Length = 1214

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +2

Query: 344  GPGTQFAL**VVLQFTGPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAEEARPDALP 517
            G    FAL    +Q     FY+ +    +++  +    H+P  P  +I E   P + P
Sbjct: 907  GLSLSFALSLTAVQVFLTKFYSYMENYIISVERIKQYMHLPPEPPAIIPENRAPSSWP 964


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 566 INGLQFAHSPFRLRNCWEGHRGGPLRL 486
           +NG + A S  R R  WEG   G +RL
Sbjct: 252 VNGEEAARSRRRRRGAWEGEEEGAVRL 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,988,709
Number of Sequences: 37544
Number of extensions: 323597
Number of successful extensions: 863
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)