Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0708.Seq
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 31 0.50
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 31 0.50
Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical pr... 30 1.2
AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A prote... 30 1.2
AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A prote... 30 1.2
AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A prote... 30 1.2
AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical ... 28 6.1
AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical ... 28 6.1
Z66494-3|CAA91258.2| 520|Caenorhabditis elegans Hypothetical pr... 27 8.1
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 31.5 bits (68), Expect = 0.50
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Frame = -3
Query: 348 GPPSRSTVSISLISNSRPLPVVICLSQRLSHDVSV-QAVLRRYREWLNISVLV------P 190
G ST SL + S P P V CL + + Q + Y+ + N ++LV
Sbjct: 624 GSTEASTSGSSLATTSAPKPSVTCLFMYDTQSKEIDQTAINTYKTYFNFALLVASKLNNE 683
Query: 189 *ILLSYLDNCGNS 151
IL Y+DN G S
Sbjct: 684 SILTGYIDNFGYS 696
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical protein
K06A9.1a protein.
Length = 1032
Score = 31.5 bits (68), Expect = 0.50
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Frame = -3
Query: 348 GPPSRSTVSISLISNSRPLPVVICLSQRLSHDVSV-QAVLRRYREWLNISVLV------P 190
G ST SL + S P P V CL + + Q + Y+ + N ++LV
Sbjct: 831 GSTEASTSGSSLATTSAPKPSVTCLFMYDTQSKEIDQTAINTYKTYFNFALLVASKLNNE 890
Query: 189 *ILLSYLDNCGNS 151
IL Y+DN G S
Sbjct: 891 SILTGYIDNFGYS 903
>Z93398-8|CAJ80823.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2915 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2955
>Z93398-5|CAD90186.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2927 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2967
>Z93398-3|CAH04742.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2813 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2853
>Z93398-2|CAH04741.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2814 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2854
>Z93398-1|CAH04740.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2896 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2936
>Z92788-8|CAJ80815.1| 3424|Caenorhabditis elegans Hypothetical protein
ZK1151.1h protein.
Length = 3424
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2915 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2955
>Z92788-5|CAD90175.2| 3436|Caenorhabditis elegans Hypothetical protein
ZK1151.1a protein.
Length = 3436
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2927 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2967
>Z92788-3|CAH04710.1| 3322|Caenorhabditis elegans Hypothetical protein
ZK1151.1f protein.
Length = 3322
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2813 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2853
>Z92788-2|CAH04709.1| 3323|Caenorhabditis elegans Hypothetical protein
ZK1151.1e protein.
Length = 3323
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2814 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2854
>Z92788-1|CAH04708.1| 3405|Caenorhabditis elegans Hypothetical protein
ZK1151.1d protein.
Length = 3405
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2896 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2936
>AJ505904-1|CAD44515.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2927 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2967
>AJ505903-1|CAD44514.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2927 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2967
>AJ505815-1|CAD44323.1| 3436|Caenorhabditis elegans VAB-10A protein
protein.
Length = 3436
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 420 PVTTL*NDGPVNCNTTHYRANWVPGP--PSRSTVSISLISNS 301
PVTT NDG +N +T +YR N + G P TV LI S
Sbjct: 2927 PVTTALNDGLINASTGNYR-NSITGEDVPLSDTVDRGLIDRS 2967
>AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical
protein E04A4.6 protein.
Length = 466
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -1
Query: 227 DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 123
D+ G++ WF +++SV WI +V+ I +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258
>AC006834-6|AAF40004.1| 233|Caenorhabditis elegans Hypothetical
protein ZK973.9 protein.
Length = 233
Score = 27.9 bits (59), Expect = 6.1
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = -3
Query: 345 PPSRSTVSISLISNSRPLPVVICLSQRLSHDVSVQAVLRRYREWLNISVLVP*ILLSYLD 166
P +STV L NSR + ++ + D +++ +R L++S L LLS L
Sbjct: 6 PDQQSTVQKLLDENSRLIDIIQEYLNQSRADEAIKHQQLLHRNLLHLSNLADPFLLSQLK 65
Query: 165 NCGNSRANTCNQNSDQ 118
+ G + A + N Q
Sbjct: 66 DDGTAAAALPDPNQQQ 81
>Z66494-3|CAA91258.2| 520|Caenorhabditis elegans Hypothetical
protein C34C6.3 protein.
Length = 520
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 185 SYSVTWITVVILELIHAIRTLTSDGMS 105
SY+V+WIT + IR + SDG++
Sbjct: 54 SYNVSWITPAASNSTYRIRLIDSDGLT 80
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,946,226
Number of Sequences: 27780
Number of extensions: 248875
Number of successful extensions: 707
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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