Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0707.Seq
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   1.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   4.5  
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    25   5.9  

>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 195 RRPGPTELWCSSPREHH**GFQKKEVEQKRFLPSIKNYKVLGETRP 332
           R+P PT       R H    F+ K   +K ++PS+KN    G+T P
Sbjct: 54  RKPLPTTFRICGYRHH---AFELKNHFEKYYVPSLKNVVHEGQTIP 96


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 82  YCTLRHLGLKYIKLRENLSFNNNKT 8
           Y T+RHL +   K++EN   N   T
Sbjct: 630 YSTIRHLTIHLAKIKENSDVNKMST 654


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 303 NYKVLGETRPSSFGPATYQDFK 368
           NY V  +TRPS  GP +   F+
Sbjct: 139 NYNVNPDTRPSKIGPPSTSHFQ 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,117
Number of Sequences: 5004
Number of extensions: 39543
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)