Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0707.Seq
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0056 - 12863599-12863715,12864107-12864235,12864322-128644...    32   0.28 
11_03_0042 - 9167881-9168075,9168159-9168251,9168328-9168409,916...    30   0.85 
06_01_0230 + 1765913-1766251,1766365-1766445,1766553-1766651,176...    29   1.5  
04_04_0361 + 24701275-24701350,24702565-24703068,24703158-24703711     29   2.6  
01_03_0145 - 13116302-13116958,13117365-13117430,13117786-131180...    28   4.5  
05_07_0219 - 28474661-28475146,28475979-28476644                       27   6.0  
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634...    27   7.9  

>07_03_0056 -
           12863599-12863715,12864107-12864235,12864322-12864408,
           12864657-12864848,12864930-12865106,12865174-12865420,
           12865510-12865619,12865751-12865851,12865937-12866000,
           12866433-12866522,12866621-12866719,12866817-12866897,
           12867197-12867535
          Length = 610

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 309 KVLGETRPSSFGPATYQDFKDIRSR-CLAEGRLFEDPRVSGRGPXPLLQGEPGQ 467
           KV G+T P  +GP T  D++D + R CL      E PRV          G  G+
Sbjct: 173 KVWGKTGPKLYGPTTGDDYRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGE 226


>11_03_0042 -
           9167881-9168075,9168159-9168251,9168328-9168409,
           9168495-9168605,9171653-9171898,9172448-9173073,
           9173402-9173422
          Length = 457

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
 Frame = -2

Query: 436 GPRP-ETRGSSKSLPSARH----RDLMSLKS*YVAGPNDDGR 326
           GP+P +T  S+++ P  +H    R+LM  ++ Y+A  NDDG+
Sbjct: 31  GPQPTDTTTSARARPKKKHGDRSRNLMPNETYYIAALNDDGK 72


>06_01_0230 +
           1765913-1766251,1766365-1766445,1766553-1766651,
           1766748-1766837,1766937-1767000,1767093-1767193,
           1767284-1767393,1767515-1767758,1767852-1768052,
           1768296-1768487,1768594-1768680,1768790-1768918,
           1769276-1769392
          Length = 617

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 309 KVLGETRPSSFGPATYQDFKD--IRSRCLAEGRLFEDPRVSGRGPXPLLQGEPGQ 467
           KV G+T    +GP T  D+KD  +R   L +  L E PR+      P  +G  G+
Sbjct: 173 KVWGKTGEKIYGPDTGVDYKDNQMRFSLLCQAAL-EAPRILNLNNNPYFKGTYGE 226


>04_04_0361 + 24701275-24701350,24702565-24703068,24703158-24703711
          Length = 377

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
 Frame = -3

Query: 348 PDRMMTGGFR-LALYNS*YWAETFFVQPLSS----GNLINDVPEGLSTIIQ*GLASLIKQ 184
           P +    G R +A Y   YW  T FV+ +SS    G+++  VPEG   +     AS+ +Q
Sbjct: 37  PSKSQMNGTRVMAEYAIPYWKITGFVEYISSGQKQGDMLLTVPEGAHAVRLGNEASIEQQ 96

Query: 183 L-FSRALY 163
           +  +R +Y
Sbjct: 97  ISVTRGMY 104


>01_03_0145 -
           13116302-13116958,13117365-13117430,13117786-13118065,
           13118283-13119028
          Length = 582

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +3

Query: 84  KNLVSSSESARACY---GRPKWRWEF 152
           KN +S    AR      GRP WRWEF
Sbjct: 107 KNFISKDFHARFFLWRDGRPNWRWEF 132


>05_07_0219 - 28474661-28475146,28475979-28476644
          Length = 383

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = -1

Query: 263 LLETSLMMFPRA*AP*FSRAWPP*LSNCFPAPCIRAPKFPPPFWPAIASSRTFTTT 96
           L +T +  + R+    F  A PP      P P       PPP  PA +SSRT T T
Sbjct: 54  LEKTRMTTWARSVVESFDTAPPP-----SPPPLSATTPHPPPPSPATSSSRTATAT 104


>08_02_0824 +
           21561699-21562415,21563294-21563362,21563424-21563459,
           21564533-21564600,21565259-21565277,21565662-21565763,
           21566173-21566288,21566501-21566595,21568093-21568264,
           21568413-21568493,21569732-21569801,21570106-21570132
          Length = 523

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 436 GPRPETRGSSKSLPSARHR 380
           GP P T  SS SLPS R R
Sbjct: 6   GPAPGTSSSSSSLPSRRRR 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,187,182
Number of Sequences: 37544
Number of extensions: 286466
Number of successful extensions: 700
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)