Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0707.Seq
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)                 29   1.5  
SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 28   4.6  
SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.6  

>SB_26577| Best HMM Match : Vicilin_N (HMM E-Value=1.5)
          Length = 649

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -2

Query: 472 WACPGSP--CSRGXGPRPETRGSSKSLPS 392
           W+ P SP  CS    PRP  RGS+ S  S
Sbjct: 228 WSVPSSPIICSPATSPRPSRRGSNVSCNS 256


>SB_35991| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 669

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -1

Query: 167 CIRAPKFPPPFWPAIASSRTFT 102
           C RAPK PPP   A+A  R  T
Sbjct: 482 CARAPKMPPPERQALARLRAHT 503


>SB_20721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 469 ACPGSPCSRGXGPRPETRGSSKSLPSARHR 380
           A  G+PC+RG   R   RG  K+   AR+R
Sbjct: 18  ATRGTPCTRGDVTRGGVRGRPKASARARYR 47


>SB_12584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 692

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
 Frame = -2

Query: 463 PGSPCSRGX--GPRPETRGSSKSL------PSARHRDLMSLKS*YVAGPNDDGRVSPS 314
           P  PC R     P P  R S           + RHR  M+L + +   P   GR SPS
Sbjct: 472 PSDPCQRSADQSPYPTQRDSQPGAGKRPCSDAGRHRHSMALNTKFAILPTSPGRSSPS 529


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 433 PRPETRGSS--KSLPSARHRDLMSLKS*YVAGPNDDGRVSP 317
           P P TRG S  + LP+ R +  ++L++  V GPN      P
Sbjct: 427 PTPPTRGGSTKRPLPTPRPKPPVTLRNKSVPGPNQKQPAQP 467


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,547
Number of Sequences: 59808
Number of extensions: 295861
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)