Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0707.Seq
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family ...    33   0.14 
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    33   0.14 
L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family ...    33   0.14 
AC024214-10|AAF36080.1|  778|Caenorhabditis elegans Calpain fami...    31   0.43 
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain famil...    28   3.1  
AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical ...    28   4.0  

>L25598-4|AAV58888.1|  737|Caenorhabditis elegans Calpain family
           protein 1, isoform b protein.
          Length = 737

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 330 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPR 419
           P S  P T  QDF ++R +CL   RLFEDP+
Sbjct: 245 PISPRPTTEPQDFYELRDQCLESKRLFEDPQ 275


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
           protein 1, isoform d protein.
          Length = 759

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 330 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPR 419
           P S  P T  QDF ++R +CL   RLFEDP+
Sbjct: 270 PISPRPTTEPQDFYELRDQCLESKRLFEDPQ 300


>L25598-2|AAV58887.1|  780|Caenorhabditis elegans Calpain family
           protein 1, isoform a protein.
          Length = 780

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 330 PSSFGPATY-QDFKDIRSRCLAEGRLFEDPR 419
           P S  P T  QDF ++R +CL   RLFEDP+
Sbjct: 291 PISPRPTTEPQDFYELRDQCLESKRLFEDPQ 321


>AC024214-10|AAF36080.1|  778|Caenorhabditis elegans Calpain family
           protein 7 protein.
          Length = 778

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 415 PEFPAVDRSLYYKESLDRPI 474
           P+FPA D SLYYK   D PI
Sbjct: 314 PQFPANDSSLYYKTRPDEPI 333


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
 Frame = +3

Query: 267 EVEQKRFLPSIKNYKVLG---------ETRPSS--FGPATYQDFKDIRSRCLAEGRLFE 410
           +V  KR LP++KN++VL          ET PS   FG  T +D + I+  C   G   E
Sbjct: 320 DVGVKRRLPAVKNHRVLDSDEEDDVIEETLPSQDVFGSGTLEDSETIKEICEKSGEFTE 378


>AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical
           protein K09F6.6 protein.
          Length = 1010

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = -3

Query: 312 LYNS*YWAETFFVQPLSSGNLINDVPEGLSTIIQ*GLASLIKQLFSRALYKGAKIPTA 139
           LY+S Y +E     PL      +D  + L  I +  +  ++KQL S   Y GAKI  A
Sbjct: 377 LYSSSYMSERLLSSPLPYP--WDDGYDTLHNIQEGTMKDMLKQLLSNGYYVGAKISVA 432


>AC024214-9|AAF36079.1|  790|Caenorhabditis elegans Calpain family
           protein 6 protein.
          Length = 790

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 363 FKDIRSRCLAEGRLFEDPR 419
           F + R +CL E RLFEDP+
Sbjct: 144 FYEERQKCLDENRLFEDPQ 162


>AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical
           protein Y47H10A.1 protein.
          Length = 702

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 363 FKDIRSRCLAEGRLFEDPR 419
           F + R +CL E RLFEDP+
Sbjct: 202 FHEERQKCLDEKRLFEDPQ 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,783,367
Number of Sequences: 27780
Number of extensions: 226258
Number of successful extensions: 437
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)