Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0707.Seq
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar ...    29   1.6  
At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi...    28   2.8  

>At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar to
           beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
           GI:8918271 from [Pisum sativum]
          Length = 769

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -3

Query: 327 GFRLALYNS*YWAETFFVQPLSSGNLINDVPEGL 226
           G ++  + S  W   F +Q L + NL+N++P+ L
Sbjct: 408 GMKMQSFGSQLWDSGFALQALVASNLVNEIPDVL 441


>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 699

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 198 SLIKQLFSRALYKGAKIPTAILACHSKLAHFH 103
           S+I++L S++  K  K+P  +L C  K  H+H
Sbjct: 429 SVIRELISQSQNKSTKLPDVLLVCSFK--HYH 458


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,326,414
Number of Sequences: 28952
Number of extensions: 219123
Number of successful extensions: 455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)