Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0705.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q95US6 Cluster: Transposase; n=1; Ceratitis rosa|Rep: T...    67   3e-10
UniRef50_O77320 Cluster: Putative uncharacterized protein MAL3P3...    33   6.7  
UniRef50_A0YPJ9 Cluster: Putative deacetylase sulfotransferase; ...    32   8.9  

>UniRef50_Q95US6 Cluster: Transposase; n=1; Ceratitis rosa|Rep:
           Transposase - Ceratitis rosa (Natal fruit fly)
          Length = 361

 Score = 67.3 bits (157), Expect = 3e-10
 Identities = 30/51 (58%), Positives = 37/51 (72%)
 Frame = -3

Query: 419 ALTDNGNGYRTMITNFLWPRIYVMDITNMWLQ*DGATCHTAR*SLNLLDEK 267
           A+T NG  YR MITNFLWP++  MD+ +MW Q DGATCHTA  ++ LL  K
Sbjct: 219 AVTVNGVRYREMITNFLWPQLEDMDVDDMWFQQDGATCHTANETMALLRNK 269


>UniRef50_O77320 Cluster: Putative uncharacterized protein MAL3P3.3;
            n=3; Plasmodium|Rep: Putative uncharacterized protein
            MAL3P3.3 - Plasmodium falciparum (isolate 3D7)
          Length = 3724

 Score = 32.7 bits (71), Expect = 6.7
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 256  NLPHFSSNKFNDYRAVWQVAPSYCNHMFVISITYILGHKKFVIIVR 393
            NL    +N FN Y   W +   YC   ++     I G KKF +I +
Sbjct: 1988 NLYEIKNNNFNLYHRYWSLFYKYCPVSYINDNKIIEGKKKFCVIYK 2033


>UniRef50_A0YPJ9 Cluster: Putative deacetylase sulfotransferase;
           n=3; Lyngbya sp. PCC 8106|Rep: Putative deacetylase
           sulfotransferase - Lyngbya sp. PCC 8106
          Length = 273

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 259 LPHFSSNKFNDYRAVWQVAPSYCNHMFV-ISITYILGHKKFVIIVRYPLPLSVSA 420
           L HF S      +  ++ APSY  H ++ + I   LG+ K + I+R P   + SA
Sbjct: 72  LKHFPSKIRKGKKLTFEAAPSYLYHQYIPLRIQQDLGNIKMIAILRNPAHRAYSA 126


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 648,033,486
Number of Sequences: 1657284
Number of extensions: 12777866
Number of successful extensions: 24483
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24474
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)