Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0705.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   3.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.5  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   7.9  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   7.9  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 546 EPIDIYNVNAPPH 584
           +P+D+YN   P H
Sbjct: 267 QPLDLYNFRVPQH 279


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 278 INLMTIVLYGKWRR 319
           INLM    +GKW R
Sbjct: 274 INLMAYDFHGKWER 287



 Score = 21.8 bits (44), Expect = 4.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 278 INLMTIVLYGKWRRPI 325
           IN+MT   +G+W R +
Sbjct: 703 INVMTYDFHGQWERTV 718


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 316 APLAIQHDSH*IYWMRNAEG 257
           +PLA QH+ +   W  N  G
Sbjct: 273 SPLAYQHEYNSFNWTANGHG 292


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 425 CSPCSYSKK*GCQAMTHY 478
           CS C+  +K G + + HY
Sbjct: 75  CSKCTEKQKEGSRKIIHY 92


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 129 RCHTKLVHQDTPPAVAAAIYLKLYSIPIVIE 37
           R H + + QD  P V  A   KL  +  V+E
Sbjct: 169 RSHFRALCQDDTPMVRRAAATKLGELAQVVE 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,914
Number of Sequences: 336
Number of extensions: 3393
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)