Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0705.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   6.3  
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha...    25   6.3  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   6.3  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   8.4  

>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
 Frame = +1

Query: 235 QKVAERTNLPHFSSNKFNDY-RAVWQVAPSYCNHMFVISITYILGHKKFVIIVRYPLPLS 411
           QKV E  +L    S         +W + P YC     +  ++ L     ++ V Y     
Sbjct: 493 QKVIEMNDLDSIPSKLLQTLVDQIWSLLPGYCYLPLDLQSSFTLEFASILVNVLYEQVSL 552

Query: 412 VSAALQSLLIFEEIRVSSYDALP 480
            S    SL    E      D LP
Sbjct: 553 RSVICNSLTALVETNSKVADKLP 575


>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 394 YPLPLSVSAALQSLLIFEEIRVSSY 468
           Y L  S+++A+ +LLIFE++  + Y
Sbjct: 71  YNLTFSIASAILALLIFEQVAPAIY 95


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 501 DG*QAHSPPGVKWLLEPIDIYN 566
           DG   H P  V WLL P DIY+
Sbjct: 234 DGGPLHDPNTVMWLLRP-DIYS 254


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 330 VTIGRRHLPYSTIVIKFIG*EMRKVCPLGYFLW 232
           +  G+++LP +     F      KVC   YF+W
Sbjct: 710 LVFGKKNLPGTLFAQTFAFVTFNKVCTSQYFMW 742


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,670,949
Number of Sequences: 5004
Number of extensions: 54285
Number of successful extensions: 104
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)