Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0705.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50270.1 68418.m06225 F-box family protein contains F-box dom...    29   3.1  
At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putativ...    27   7.2  
At3g24540.1 68416.m03082 protein kinase family protein contains ...    27   7.2  
At5g56390.1 68418.m07039 F-box family protein contains F-box dom...    27   9.5  
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    27   9.5  
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f...    27   9.5  

>At5g50270.1 68418.m06225 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 381

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 240 FLWC*LKSLVYADKLQSIATLKFNIL---GLFVN*APFIRRCHTKL 112
           FLW  +  LVY D  Q++   KF+      LF+  AP I   H KL
Sbjct: 37  FLWMMVPKLVYDDSYQNLEYGKFSRFVDRSLFMRKAPGIETLHFKL 82


>At4g39370.1 68417.m05573 ubiquitin-specific protease 27, putative
           (UBP27) similar to GI:11993494; ubiquitin specific
           protease 66 - Gallus gallus,PID:g3800764
          Length = 494

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 373 KFVIIVRYPLPLSVSAALQSLLIFEEIRVSSYDALP 480
           K +II R+P  L +     S  +FEE ++S + A P
Sbjct: 350 KQLIIARFPKLLCIQVQRASFNMFEEFKLSGHIAFP 385


>At3g24540.1 68416.m03082 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 509

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 342 DIHNIYSRPQKVCYHRPISVAIVSERSFAVLAHIRRN 452
           D +N+Y+    V + RP+ V  + E +F  LA I+ N
Sbjct: 380 DANNVYADDSLVDWARPLLVQALEESNFEGLADIKLN 416


>At5g56390.1 68418.m07039 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 428

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 240 FLWC*LKSLVYADKLQSIATLKFNIL---GLFVN*APFIRRCHTKLVH 106
           +LW  + SLVY D  Q I   +F+      L ++ AP I   H KL H
Sbjct: 37  YLWMMVPSLVYDDSYQDIDYGRFSRFVDRSLALHKAPVIDTLHFKLGH 84


>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2
            (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
            and PF00569: Zinc finger, ZZ type; identical to cDNA
            p300/CBP acetyltransferase-related protein 2  GI:12597460
          Length = 1691

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 193  VYCHPEVQHTRALRELSPVYTKMSYKIGPSG 101
            +YCHPE+Q T    +L   Y  M  K    G
Sbjct: 1255 LYCHPEIQKTPKSDKLREWYLAMLRKASKEG 1285


>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
            (ZZ type) family protein contains Pfam profiles PF02135:
            TAZ zinc finger, PF00569: Zinc finger, ZZ type
          Length = 1706

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 193  VYCHPEVQHTRALRELSPVYTKMSYKIGPSG 101
            +YCHPE+Q T    +L   Y  M  K    G
Sbjct: 1270 LYCHPEIQKTPKSDKLREWYLAMLRKAAKEG 1300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,063,027
Number of Sequences: 28952
Number of extensions: 286957
Number of successful extensions: 514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)