Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0704.Seq
         (399 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4PMZ6 Cluster: Putative secreted protein; n=1; Ixodes ...    61   7e-09
UniRef50_UPI0000E7FA5A Cluster: PREDICTED: hypothetical protein;...    42   0.006
UniRef50_Q6Z8F1 Cluster: Putative uncharacterized protein P0459B...    36   0.39 
UniRef50_A4RKZ9 Cluster: Putative uncharacterized protein; n=3; ...    32   3.6  
UniRef50_Q5DDG7 Cluster: SJCHGC07011 protein; n=1; Schistosoma j...    31   6.3  
UniRef50_Q0FI72 Cluster: Putative uncharacterized protein; n=1; ...    31   8.3  

>UniRef50_Q4PMZ6 Cluster: Putative secreted protein; n=1; Ixodes
           scapularis|Rep: Putative secreted protein - Ixodes
           scapularis (Black-legged tick) (Deer tick)
          Length = 65

 Score = 61.3 bits (142), Expect = 7e-09
 Identities = 29/53 (54%), Positives = 34/53 (64%)
 Frame = +1

Query: 55  PY*GDTXNGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSDGMSAFIRSKPI 213
           P  G+T NGS+ Q WFLRS+  TWITV ILELIHA+         AFIR + I
Sbjct: 2   PKQGETANGSLNQLWFLRSFLPTWITVAILELIHAVSPKPLGATGAFIRPRSI 54


>UniRef50_UPI0000E7FA5A Cluster: PREDICTED: hypothetical protein;
           n=2; Gallus gallus|Rep: PREDICTED: hypothetical protein
           - Gallus gallus
          Length = 508

 Score = 41.5 bits (93), Expect = 0.006
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = +3

Query: 120 YLDNCGNSRANTCNQNSDQ*WDECFY*IKTN 212
           YLDNCGNSRANTC +      D C Y  KTN
Sbjct: 468 YLDNCGNSRANTCRRAPTS-GDACIYQTKTN 497



 Score = 31.5 bits (68), Expect = 6.3
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +2

Query: 11  ICLSQRLSHACLS 49
           ICLSQRLSHACLS
Sbjct: 430 ICLSQRLSHACLS 442


>UniRef50_Q6Z8F1 Cluster: Putative uncharacterized protein
           P0459B01.16; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0459B01.16 - Oryza sativa subsp. japonica (Rice)
          Length = 172

 Score = 35.5 bits (78), Expect = 0.39
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2

Query: 2   PVVICLSQRLSHACLS 49
           PVVICLSQRLSHAC S
Sbjct: 155 PVVICLSQRLSHACAS 170


>UniRef50_A4RKZ9 Cluster: Putative uncharacterized protein; n=3;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 775

 Score = 32.3 bits (70), Expect = 3.6
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +2

Query: 173 PVMG*VLLLDQNQSTEGLASEVVNFDELDNFCRSHGQVP 289
           P+M  +L L Q+  T G AS V+ FD   ++CR H  +P
Sbjct: 85  PIMLGMLWLKQHDPTIGFASHVITFD--SDYCRRHCNMP 121


>UniRef50_Q5DDG7 Cluster: SJCHGC07011 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC07011 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 101

 Score = 31.5 bits (68), Expect = 6.3
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 123 LDNCGNSRANTCNQNSDQ*WDECFY*IKTNR 215
           +DNC NSRANTC ++  +     F   +TNR
Sbjct: 1   MDNCSNSRANTCLESLTRKGTGAFIRTETNR 31


>UniRef50_Q0FI72 Cluster: Putative uncharacterized protein; n=1;
           Roseovarius sp. HTCC2601|Rep: Putative uncharacterized
           protein - Roseovarius sp. HTCC2601
          Length = 507

 Score = 31.1 bits (67), Expect = 8.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 112 YSVTWITVVILELIHAIRTLTSDGMSAFIRSKPIDG 219
           YS T + VV+ EL+    T+ SD  +A I + P+DG
Sbjct: 139 YSATSMAVVLSELVVDDETIPSDNAAAQISAGPVDG 174


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 308,981,522
Number of Sequences: 1657284
Number of extensions: 4683205
Number of successful extensions: 8928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8928
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)