Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0704.Seq
         (399 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   3.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   5.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   7.8  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 119
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 119
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 119
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 119
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 9   LYACLKD*AMHVSVQAVLRRYREWLNISVLVP*ILLS 119
           +YAC  +  + V+    +RR   +   +++VP +L+S
Sbjct: 190 VYACCPEPYVDVTFTIKIRRRTLYYFFNLIVPCVLIS 226


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 2   PVVICLSQRLSHACLS 49
           P VI    R+SH C+S
Sbjct: 73  PCVISRQLRVSHGCVS 88


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 7.8
 Identities = 10/41 (24%), Positives = 17/41 (41%)
 Frame = +1

Query: 97   WFLRSYSVTWITVVILELIHAIRTLTSDGMSAFIRSKPIDG 219
            WF  +   T IT     ++H ++  T+  M     +   DG
Sbjct: 1146 WFDENTKDTKITAASETILHGLKKYTNYSMEVLAYTSGGDG 1186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,758
Number of Sequences: 336
Number of extensions: 1195
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8541369
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)