Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0704.Seq
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    29   0.35 
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.3  
SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase |Schizosacchar...    24   7.6  
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    24   7.6  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    24   10.0 
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    24   10.0 

>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 287 VLDHAICKSYPIHQN*RLRTXGPPSIGFDLIKALIP 180
           ++D    K Y IH +  L     PS GF +I++L+P
Sbjct: 391 LIDQGYIKGYIIHASSTLVLKKDPSFGFSVIESLMP 426


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +1

Query: 76  NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 180
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


>SPAC8F11.10c |pvg1|SPACUNK4.18|pyruvyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 294 VXGT*PCDLQKLSNSSKLTTSDARPSVD 211
           + G    DLQ L N S LT+  +  SVD
Sbjct: 25  IYGVTRTDLQTLKNPSSLTSPSSSTSVD 52


>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 188 VLLLDQNQSTEGLASEVVNFDELDNFCRSHGQVPXTH 298
           +LLLD+  S     SEV+    LDN  RS   +   H
Sbjct: 588 ILLLDEATSALDSKSEVLVQKALDNASRSRTTIVIAH 624


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 76  NGSIYQFWFLRSYSVTWITVVILEL 150
           NG + +F+FL S ++ W+   +LE+
Sbjct: 22  NGKMKEFFFLVSETMDWLNEHMLEV 46


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 114 LSYLDNCGNSRANTC 158
           ++YLD   NSR NTC
Sbjct: 75  VNYLDETPNSRYNTC 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,302,935
Number of Sequences: 5004
Number of extensions: 20598
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)