Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0704.Seq
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   5.5  
01_06_1128 - 34724469-34724699,34726103-34726213,34726301-347264...    27   7.2  
05_06_0101 - 25581800-25581943,25582030-25582095,25582268-255823...    26   9.5  

>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 150 NTCNQNSDQ*WDECFY*IKTNRRR 221
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


>01_06_1128 -
           34724469-34724699,34726103-34726213,34726301-34726409,
           34726517-34726581,34726661-34726838,34726918-34726997,
           34727838-34727961,34728064-34728172,34728299-34728461
          Length = 389

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 100 FLRSYSVTWITVVILELIHAIRTLTSDGMSAF 195
           F+R Y  TW  +   +L+  + TLT    S F
Sbjct: 241 FIRCYDCTWTLIDEYDLVDPVHTLTPPEESGF 272


>05_06_0101 -
           25581800-25581943,25582030-25582095,25582268-25582390,
           25582635-25582722,25582823-25582920,25583088-25583147,
           25583228-25583288,25583374-25583505,25583957-25584167,
           25584515-25584648,25584907-25584989,25585077-25585142,
           25585552-25585607,25585701-25585800,25586313-25586421,
           25586499-25586653,25586767-25586937,25587129-25587212,
           25587261-25587345,25587431-25587477,25587912-25588124
          Length = 761

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +2

Query: 200 DQNQSTEGLASE--VVNFDELDNFCRSHG 280
           + +Q T G  S+  V+ FDE+D  C+S G
Sbjct: 315 ENDQKTRGDQSDLHVIIFDEIDAICKSRG 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,323,080
Number of Sequences: 37544
Number of extensions: 130177
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)